LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g2547	ATGTCTGTCATCGGAACCCCCGCCGTCCACCACCGCAGCGGGGGCGCCATCGATCACCACCGTCACCCATCTAAACGCAAATTCGACGATGAAGACGACGAAGATTTATCGGACTTAGTCTGTGTGAGGATGCGGAAGGACGAGGCCAAAGCCGTGAATTCCACCTCCTCCTCCTCCGATGCCGGCTGCTCTTCCTTGCAGCAGCGATCCCACATCCAGTTCTTCGTGCGAATGATGTCCGCCGGAAACACGATTGTGATGCAAGCCTTCCCCGAAGACAGCGTGAAATCGATTCACGAGCGTATCCAAAACATGAAGGGAATTCCATTGTTTGAGCAGAGGTTAATTTATCGCGGGAAGCAACTTCAGTGGGAACAGACTCTCGCTGAGTGTTCCATTCAAAACGACGCCAACCTTCAGTTAGTTGGTCGTATGCGAAGTACTGAACACCCTCAAGCCTGGCAAGTTATCAACGACATGGTTTCTCTCGTTTATCGTCTTTGCCGCGGCGAGACTGTTGACGATGCCTTGAAAACCATCAAAGGGTTGATCACCAATTACTTGAGCATGACTCCCAGAATTGACAACGACTCTGCCTTTGGCTACTTTCAGATTTTCATGTCTTCTTCTGCCCCTTCTGTGCTTGCTTTGCTCTATATGTCCCCATACGCAGGTAACAAGGACTATGCTGATTCCTCTGTTAGACACTTTTTGAGTTCCTGTCGCAATACTTTGTCTAAGGCTTTGCATGGTCAGTGTGCTCGTGTCGTCTTGGAGTTTTGTAAATTGCTTAGAAGAGTCGGCTGTCATGACCCTTTGTATCTCTATTGTCGGAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGGGTTTCCTATTCTGCTTCTGATAATGTTAAGGAGTTGGTTTTCATTCAGGACATTTTCCCCTTTGTTCGTGAGCTTGCTAATAGCTTGCTGAGGGACTTGGACTTGAGTATGGAATCCCCCACGGCTGCGGGGCCTTTGTCCAATGATGTTGGGGATTTTTCTGCATTCTTAATGCCTTTGAGGATTGGTATCAAGGAGCAACAAGCTGTCAAGGATTCTATGGCTCAAGACAAATGCCATAAGAACCTCTTACTTGCGGCCGAGATTGAATGTCTTCATAGTTTGTACATTCAGCTGTTGGACAAAATTGATCACTGCCTTCAAAAAATGGACAAAAGCTTGGCTGATCATGAAATGATGGAAGGGGGTAGTCTTTATCCTGCATGGTCTCATTATCTTTCCATCTTGAAAGAGCTGTATCAAATTTCCAAGCTTTATGATGGTGCCGAAGAAAAGCTTTGGAGCATTTTGTCACGGCAAAGAAGTGTGCTGTGTCTGCTGATCGTTCGATATGCTAAGAGAACTGATGAGCATCAGTGGATTCTTGAGCATAGGTGTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTAAAAGAAGACTATGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTATTGACCGAGTCTTTTGAATACATAGCACGTGCTGAGCCTGAATCTCTACATGCTGGCCTGTTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTATTAAGGGAGTGGTTTCTTCTAGTATGTCAAGCAATATTCAATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGATCAAAGGAGATTTTTCCCTAACCCTGCATCTAAGATACATCCTCTGCACCTTGAGTACTTCAGCTTTGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTATTTTTCTTGCAATTGGCGGGAAACTATATTGCTTTAGAAGATATAAGGGTTGCAGATCCCTATCTGTATACTAGCTGCAAACAAATATTGGATATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGAATTGGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGCGGAAAAAACCTTGTAGTTAATAGTAAGAACAGGGACAAGTATGTTGATCTTCTTATACAAGATCGCTTCGTAACATCCATATCTGAGCAGGTAACACATTTTGCCAAAGGTTTTGCTGATATTCTTTCAAACTCAAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTTGAAGATCTTGATTGGATGCTGCACGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCGCATACCGAGTATAATGGCTATAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATTGTTGGAAGAATGACAGCAGATCAAAGGAAGGTTCTTCTATTCTTTTGGACATCTGTAAAATATTTACCAGTTGAAGGTTTCCGTGGGTTGGCTTCCCGTCTCTACATATACAGATCCCTTGAACCTGGTGATCGCCTGCCTTCATCTCACACATGCTTTTTCCGGCTGTGTTTCCCAGCTTATTCATCTATGGCTGTCATGAAAGATCGTCTTGAAGTCATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA	2589	0.4438	MSVIGTPAVHHRSGGAIDHHRHPSKRKFDDEDDEDLSDLVCVRMRKDEAKAVNSTSSSSDAGCSSLQQRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQNMKGIPLFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCRGETVDDALKTIKGLITNYLSMTPRIDNDSAFGYFQIFMSSSAPSVLALLYMSPYAGNKDYADSSVRHFLSSCRNTLSKALHGQCARVVLEFCKLLRRVGCHDPLYLYCRSTFGSLLETAGVSYSASDNVKELVFIQDIFPFVRELANSLLRDLDLSMESPTAAGPLSNDVGDFSAFLMPLRIGIKEQQAVKDSMAQDKCHKNLLLAAEIECLHSLYIQLLDKIDHCLQKMDKSLADHEMMEGGSLYPAWSHYLSILKELYQISKLYDGAEEKLWSILSRQRSVLCLLIVRYAKRTDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDQRRFFPNPASKIHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGNYIALEDIRVADPYLYTSCKQILDMDADFIDSDALGLTFVREVEELGQRKVVELCPGGKNLVVNSKNRDKYVDLLIQDRFVTSISEQVTHFAKGFADILSNSKLQQYFFQSLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDIQISWFWEIVGRMTADQRKVLLFFWTSVKYLPVEGFRGLASRLYIYRSLEPGDRLPSSHTCFFRLCFPAYSSMAVMKDRLEVITQEHIGCSFGTW	862

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g2547	862	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	52	860	-	-
	Aed6g2547	862	SUPERFAMILY	Ubiquitin-like	72	160	IPR029071	-
	Aed6g2547	862	Pfam	Ubiquitin family	75	146	IPR000626	GO:0005515
	Aed6g2547	862	Pfam	HECT-domain (ubiquitin-transferase)	551	854	IPR000569	GO:0004842
	Aed6g2547	862	ProSiteProfiles	Ubiquitin domain profile.	72	148	IPR000626	GO:0005515
	Aed6g2547	862	Gene3D	-	65	162	-	-
	Aed6g2547	862	Gene3D	Hect, E3 ligase catalytic domain	622	704	-	-
	Aed6g2547	862	Gene3D	Hect, E3 ligase catalytic domains	502	727	-	-
	Aed6g2547	862	SUPERFAMILY	Hect, E3 ligase catalytic domain	497	848	IPR035983	GO:0004842
	Aed6g2547	862	ProSiteProfiles	HECT domain profile.	522	862	IPR000569	GO:0004842
	Aed6g2547	862	Gene3D	Hect, E3 ligase catalytic domain	745	861	-	-
	Aed6g2547	862	PRINTS	Ubiquitin signature	83	103	IPR019956	-
	Aed6g2547	862	PRINTS	Ubiquitin signature	125	146	IPR019956	-
	Aed6g2547	862	PRINTS	Ubiquitin signature	104	124	IPR019956	-
	Aed6g2547	862	MobiDBLite	consensus disorder prediction	1	31	-	-
	Aed6g2547	862	SMART	hect_3	520	860	IPR000569	GO:0004842
	Aed6g2547	862	CDD	HECTc	501	860	IPR000569	GO:0004842
	Aed6g2547	862	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE UPL5	52	860	-	-
	Aed6g2547	862	SMART	ubq_7	72	144	IPR000626	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g2547	Aed-Chr6	26588849	26595789	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g2547	72	146	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	40.000	3.70e-12	62.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g2547	-		-	gmx:100796470	1588.16