Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2532 ATGAGTAGTCAGCTGGTCCGCAGCGAGAGAAGTACCATTCTGGGTTTGTCAACGGAGCAAATGGACGGCATCGTCGATGATACAGCCCAACGGAGGAGGCGGACCCTCAAAGAACGCCTCAGATTCACCTGTTGTGGGGCCACCTGGGTTGTCAGTGACAGTGACGAACAGCAACAACAGGAACCAGATCCGAATCCTAGTGGAGGTTCGGGTATGAATCTTGCAGCGGCGCTGGCAGCAGAGCGCCAATTCCGGGAGGGGGAGGGGGAGGCGAAGAGGGTGTCGTTGATGCGGCTGCTGGAGGAGACGGAGGTTGGGGATGAAGCAGGGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCAGCGTTCATCCCGTGTGGGCACACATTCTGTAGGGCGTGTTCGAGGGAGCTGTGGTTGAATAGAGGTACTTGTCCCCTTTGCAACCGTTCCATACTCCAGATTCTCGACATCTTCTGA 495 0.5677 MSSQLVRSERSTILGLSTEQMDGIVDDTAQRRRRTLKERLRFTCCGATWVVSDSDEQQQQEPDPNPSGGSGMNLAAALAAERQFREGEGEAKRVSLMRLLEETEVGDEAGGNDSVCCVCMGRKKGAAFIPCGHTFCRACSRELWLNRGTCPLCNRSILQILDIF 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2532 164 Pfam Zinc finger, C3HC4 type (RING finger) 113 159 - -
Aed6g2532 164 SUPERFAMILY RING/U-box 115 160 - -
Aed6g2532 164 CDD RING-HC 116 153 - -
Aed6g2532 164 ProSiteProfiles Zinc finger RING-type profile. 116 154 IPR001841 -
Aed6g2532 164 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 58 164 - -
Aed6g2532 164 MobiDBLite consensus disorder prediction 53 73 - -
Aed6g2532 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 163 IPR013083 -
Aed6g2532 164 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 60 - -
Aed6g2532 164 MobiDBLite consensus disorder prediction 53 67 - -
Aed6g2532 164 SMART ring_2 116 153 IPR001841 -
Aed6g2532 164 PANTHER OS01G0917900 PROTEIN 58 164 - -
Aed6g2532 164 PANTHER OS01G0917900 PROTEIN 10 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2532 Aed-Chr6 26516526 26517020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2532 13 164 C3H Transcription Factor Family AT4G22250 49.744 4.77e-52 163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2532 6 26516526 26517020 Aed9g0731 9 5089764 5090387 PCT