Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2528 ATGGAGGGTGTTTCTAACGAGGCTTCTAGAGTGATGGGTTTTGGAGAGAATACAACTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTACTGACTACTTCTCATCATGCTGGTCATCATCCATTAAATCCTATTCTTCTTAATAATCCAAATCCTAATCAACACACAAACACTCTCTTCCTTCCCATGACTTCTACTACTAATAATCACCACAACTCCAACGCCACTACTGAATTAGGGTATTTCATGGAGATTCCCAACAACAACAACAACGATGGAAGCTCCTCTTCATCTTCTTCCGCTGTCAAGGCCAAAATCATGGCCCATCCTCACTATCACCGTCTCTTGGCGGCCTACGTCAATTGTCAAAAGGTTGGGGCTCCACCTGAAGTGGTAGCAAGGCTAGAAGAAGCATGTGCATCTGGTGCAGTGACAATGGCAGGTGGAACCGCCAGCATAGGTGAGGATCCAGCGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCCATGCTCTTCCTTCAAAGGATAGAGTGCCAGTTCAAATCTCTCACTATTTCTTCTTCTTTGGACACTGGTTGTAATGGATCATGTGAAGATGTAGTTGATGTTGAGAACAACAACATAATAGATCCGCAGGCAGAGGACCAAGAACTGAAAGGTCAACTCTTAAGGAAGTACCGTGGATACCTAGGCAGTTTGAAGCAGGAATTCACAAAGAAGAGGAAAAAGGGCAAACTGCCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGTAGACACTACAAATGGCCTTACCCTTCTGAATCTCAGAAGCTGGCACTTGCAGAGTCAACAGGACTGGATCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGGAAGCGACACTGGAAGCCTTCAGAGGACATGCAATTCGTGATGGTGGATCCAACCCATCCACACTACTACATGGATAATGTTCTCGCTGCCGCCAATCCCTTTCCAATGGATCTCTCCCACACAATGCTCTGA 1062 0.452 MEGVSNEASRVMGFGENTTSSGVCPMMMMPLLTTSHHAGHHPLNPILLNNPNPNQHTNTLFLPMTSTTNNHHNSNATTELGYFMEIPNNNNNDGSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASGAVTMAGGTASIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIECQFKSLTISSSLDTGCNGSCEDVVDVENNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVMVDPTHPHYYMDNVLAAANPFPMDLSHTML 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2528 353 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 16 342 - -
Aed6g2528 353 SMART KNOX1_2 101 145 IPR005540 GO:0003677|GO:0005634
Aed6g2528 353 SMART KNOX2_2 150 201 IPR005541 GO:0003677|GO:0005634
Aed6g2528 353 Pfam ELK domain 233 253 IPR005539 GO:0003677
Aed6g2528 353 Pfam Homeobox KN domain 273 312 IPR008422 GO:0003677|GO:0006355
Aed6g2528 353 ProSiteProfiles 'Homeobox' domain profile. 253 316 IPR001356 GO:0003677
Aed6g2528 353 Pfam KNOX2 domain 153 200 IPR005541 GO:0003677|GO:0005634
Aed6g2528 353 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 16 342 - -
Aed6g2528 353 ProSiteProfiles ELK domain profile. 233 253 IPR005539 GO:0003677
Aed6g2528 353 Pfam KNOX1 domain 102 141 IPR005540 GO:0003677|GO:0005634
Aed6g2528 353 ProSitePatterns 'Homeobox' domain signature. 291 314 IPR017970 GO:0000981|GO:0006355
Aed6g2528 353 SUPERFAMILY Homeodomain-like 255 330 IPR009057 -
Aed6g2528 353 CDD homeodomain 265 317 IPR001356 GO:0003677
Aed6g2528 353 Gene3D - 258 320 - -
Aed6g2528 353 SMART ELK_2 233 254 IPR005539 GO:0003677
Aed6g2528 353 SMART HOX_1 255 320 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2528 Aed-Chr6 26488786 26493087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2528 103 353 Homeobox Transcription Factor Family AT1G62360 78.113 1.42e-131 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aed6g2528 KNOX2 4.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2528 - - gmx:100127401 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2528 6 26488786 26493087 Aed9g0723 9 5030173 5036268 PCT