Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2496 ATGGGTTGTCACGGTAGCAAGGAGAAAAAATCAAAGACTGAATTTTCCAGTGCCTATGGATCAGGCAGTGGAAGTGCTGGTGGTGGTGGTAGTAGTTACAACACTGTTCAGCCACCAACTGCTACTACTACTGCTAGCAATCAGGTTCAAACATCAGCACCGCAGGCTTCTTCAGCAAACCCTAAACCTTATTCCAGCCAAAATGCTGCGAGGACAGTGCAGAAAGCTGACACGAGCATTCTGGGGAAACCCTTCGACGACATAAAGAAGTACTACAGTCTGGGGAAGGAATTGGGAAGGGGCCAATTCGGGATAACGTATCTGTGCACGGAGATTTCGAGTGGAGGGACGTACGCGTGCAAGTCGATACTGAAGAGGAAGTTGGTGTCGAAGGCGGACAGGGAGGACATGAAGAGGGAGATTCAGATAATGCAGCATTTGTCAGGGCAGCCCAACATTGTGGAGTTCAAGGGAGCCTACGAGGACAGGCTCTCCGTCCACCTCGTCATGGAACTCTGCGCCGGCGGTGAACTCTTCGATCGAATAATCGCTCAGGGTCACTACTCCGAGAGAGCCGCCGCCGACCTCTGCCGCTCCATTGTTAACGTTGTCCACATTTGTCACTTCATGGGTGTCTTGCACCGCGATCTCAAGCCCGAGAATTTCTTGCTCTCCACCAAGGACCCCCACGCCACGCTCAAGGCTACTGATTTTGGTCTCTCTGTCTTCATTGAAGAAGGGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATTGATATTTGGAGCGCTGGCATTATCTTGTATATTCTTCTAAGTGGTGTACCACCTTTTTGGGCCGAAACTGAAAAGGGAATATTTAACGCCATTTTGGAAGGGGACATTGATTTTGTTAGTGAACCATGGCCATCCATATCGGACAGTGCTAAAGATCTAGTCAGGAAGATGCTTACACAGGATCCAAAGAAGCGGATTACTTCTGCTCAAGTCCTTGAACACCCATGGATGAGAGAAGGTGGAGATGCATCTGATAAACCAATTGATAGTGCAGTTCTATCCAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTGGCACTGAAGGTTATCGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAAGCAATGTTTGCAAATATGGACACTGACAATAGTGGCACCATCACCTATGAAGAACTGAAGTCTGGCTTGGCTCGAATCGGATCAAGACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCTGCTGATGTTGATGGAAATGGGTCAATTGACTATCTTGAATTCATTTCGGCTACAATGCATAGGCACAGACTTGAACGTGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGGTATATTACAAGAGATGAATTGGAGACTGCTATGACTCAACATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATACAGATAATGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAGTGCCACACCAGGGGCAGCTACTTTAA 1623 0.4621 MGCHGSKEKKSKTEFSSAYGSGSGSAGGGGSSYNTVQPPTATTTASNQVQTSAPQASSANPKPYSSQNAARTVQKADTSILGKPFDDIKKYYSLGKELGRGQFGITYLCTEISSGGTYACKSILKRKLVSKADREDMKREIQIMQHLSGQPNIVEFKGAYEDRLSVHLVMELCAGGELFDRIIAQGHYSERAAADLCRSIVNVVHICHFMGVLHRDLKPENFLLSTKDPHATLKATDFGLSVFIEEGKVYHDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGDIDFVSEPWPSISDSAKDLVRKMLTQDPKKRITSAQVLEHPWMREGGDASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDNSGTITYEELKSGLARIGSRLSEAEVKQLMDAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDNSGYITRDELETAMTQHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGVPHQGQLL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2496 540 SMART serkin_6 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g2496 540 MobiDBLite consensus disorder prediction 15 75 - -
Aed6g2496 540 ProSitePatterns EF-hand calcium-binding domain. 406 418 IPR018247 -
Aed6g2496 540 ProSiteProfiles EF-hand calcium-binding domain profile. 393 428 IPR002048 GO:0005509
Aed6g2496 540 ProSiteProfiles EF-hand calcium-binding domain profile. 429 464 IPR002048 GO:0005509
Aed6g2496 540 SMART efh_1 469 497 IPR002048 GO:0005509
Aed6g2496 540 SMART efh_1 397 425 IPR002048 GO:0005509
Aed6g2496 540 SMART efh_1 433 461 IPR002048 GO:0005509
Aed6g2496 540 SMART efh_1 504 532 IPR002048 GO:0005509
Aed6g2496 540 ProSiteProfiles Protein kinase domain profile. 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g2496 540 MobiDBLite consensus disorder prediction 1 75 - -
Aed6g2496 540 Gene3D Transferase(Phosphotransferase) domain 1 178 357 - -
Aed6g2496 540 ProSitePatterns EF-hand calcium-binding domain. 513 525 IPR018247 -
Aed6g2496 540 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 49 534 - -
Aed6g2496 540 ProSitePatterns EF-hand calcium-binding domain. 478 490 IPR018247 -
Aed6g2496 540 ProSitePatterns Protein kinases ATP-binding region signature. 98 125 IPR017441 GO:0005524
Aed6g2496 540 Pfam EF-hand domain pair 468 530 IPR002048 GO:0005509
Aed6g2496 540 Pfam EF-hand domain pair 398 458 IPR002048 GO:0005509
Aed6g2496 540 Gene3D Phosphorylase Kinase; domain 1 94 177 - -
Aed6g2496 540 SUPERFAMILY Protein kinase-like (PK-like) 90 358 IPR011009 -
Aed6g2496 540 CDD STKc_CAMK 92 349 - -
Aed6g2496 540 Gene3D - 358 532 - -
Aed6g2496 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Aed6g2496 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 49 534 - -
Aed6g2496 540 ProSitePatterns EF-hand calcium-binding domain. 442 454 IPR018247 -
Aed6g2496 540 ProSiteProfiles EF-hand calcium-binding domain profile. 465 500 IPR002048 GO:0005509
Aed6g2496 540 ProSiteProfiles EF-hand calcium-binding domain profile. 501 535 IPR002048 GO:0005509
Aed6g2496 540 SUPERFAMILY EF-hand 389 529 IPR011992 -
Aed6g2496 540 Pfam Protein kinase domain 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g2496 540 CDD EFh 472 530 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2496 Aed-Chr6 26284608 26288399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2496 1 540 EF-hand Containing Proteins AT4G04720 74.677 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Aed6g2496 Pkinase 3.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2496 K13412 - gmx:100812843 952.584