Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2489 ATGATGCAAGCTGGACCCGGCATGGCCCAACAACCCAACCAGCAATACGCACAGCAACAGCAGCAACAACAACAACCCTACATGATGATGCCGCCGCAGCCTCAGGCCCCTCAGATGTGGGCTCAATCGGCCCAGGCTCCGCAGCAATCGGGGGCTCCTCCACAACCCACCAGCGCCGATGAGGTCCGTACCCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAAAATTATCTCTACACCTGTTTCGCACACACCGGCGAGGTGGGTTCAGTTAAAGTCATTCGGAACAAACAAACCAGTCAATCTGAGGGATATGGGTTTATTGAGTTTACTAGTCGTGCTGGTGCTGAGAGAGTCCTTCAAACATACAATGGAACCATTATGCCGAATGGCGGGCAGAACTTCAGATTGAACTGGGCAACATTTAGTGCGGGTGAGAGGCGTCATGATGACAGCCCAGATCACACCATATTTGTTGGAGACCTGGCTGCAGATGTTACCGATTATCTTCTGCAAGAGACATTTCGGGCACGATTTCCTTCTGTTAAGGGGGCCAAAGTTGTAATTGATAGGCTAACTGGACGGACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGAGCTATGGCTGAAATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGCGAATTGGACCAGCCTCTAATAAAAACCCTAGCACTCAGTCTCAGCCAAAAGGCACTGAACATGCTATTGCTTCTCAGGGTGCTATTTTTCTCTATTCATGTACTTGTTCACCGAAAGGTCAAGCAGATTCAAACCAGTGGAATGGTGGTAGTGGTGGATATTATGGATATGCTGCTCAGGGTTATGAAAATTATGGTTATGCTCCTTCTGGACAGGACCCCAACATGTATGGCAGTTATCCTGGCTATGCAAATTACCAGCCTCCTCAGCAACAGCAGCAAATAGGATATAGCTAA 981 0.4862 MMQAGPGMAQQPNQQYAQQQQQQQQPYMMMPPQPQAPQMWAQSAQAPQQSGAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVGSVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMAEMQGVLCSTRPMRIGPASNKNPSTQSQPKGTEHAIASQGAIFLYSCTCSPKGQADSNQWNGGSGGYYGYAAQGYENYGYAPSGQDPNMYGSYPGYANYQPPQQQQQIGYS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2489 326 CDD RRM2_SECp43_like 155 234 - -
Aed6g2489 326 SUPERFAMILY RNA-binding domain, RBD 149 244 IPR035979 GO:0003676
Aed6g2489 326 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 266 323 - -
Aed6g2489 326 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 18 243 - -
Aed6g2489 326 MobiDBLite consensus disorder prediction 36 57 - -
Aed6g2489 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 221 IPR000504 GO:0003723
Aed6g2489 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 130 IPR000504 GO:0003723
Aed6g2489 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 143 IPR000504 GO:0003723
Aed6g2489 326 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 266 323 - -
Aed6g2489 326 SMART rrm1_1 157 231 IPR000504 GO:0003723
Aed6g2489 326 SMART rrm1_1 64 139 IPR000504 GO:0003723
Aed6g2489 326 MobiDBLite consensus disorder prediction 312 326 - -
Aed6g2489 326 SUPERFAMILY RNA-binding domain, RBD 27 144 IPR035979 GO:0003676
Aed6g2489 326 MobiDBLite consensus disorder prediction 306 326 - -
Aed6g2489 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 235 IPR000504 GO:0003723
Aed6g2489 326 CDD RRM1_SECp43_like 64 144 - -
Aed6g2489 326 MobiDBLite consensus disorder prediction 1 59 - -
Aed6g2489 326 Gene3D - 3 146 IPR012677 -
Aed6g2489 326 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 243 - -
Aed6g2489 326 Gene3D - 147 294 IPR012677 -
Aed6g2489 326 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2489 Aed-Chr6 26240258 26244787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2489 65 237 Eukaryotic Initiation Factors Gene Family AT4G34110 24.855 6.54e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2489 - - gmx:100796848 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2489 6 26240258 26244787 Aed9g0673 9 4699373 4712687 PCT