Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2488 ATGGATTCTAAGGAACCTCCCTCTCCCTCTCCCTCTCCCTATCCTCGTTCATCCTCTCTTCTGAAGGACATTTCCAACTTCACTACCCCCAGACGCCCCCCTTTCTCTCTCACCACCGCCCAATCTCCCGCCACCCAATTCTTCACCGCCTCCAAACACAACACCTCTTCCTCCTTCCACTGCCGCCCCAGCAAATCATCCACCGCCGCCTCCAAGAAACTCAAGGCCTTCCAATTGGAGCAGTCCCAGTCCTCCCGCAAGGCCCAAATAAAAAAGGAACACTCCCTCAAATCCCTCGCCAAGTCCCTCTCCGTCTGGCTCAACTTCCTTCTCCAAAACCCTACTTCCTGCGGCTGCCACTTCTCTTCCGCCGCCGCTCCCTCCACCAACGGCAAGCGAGATGGCGCCCCTAGAACCTCCCTCGTCGGCGTCGATTCCACCTGGCGAACTCCCAAGCGCCAGAGGAAGACCTGCTCCGCAAATGAGGTCACCGATTCCTCGTTTTCGCAACTCAGGGATTCTCTCAAGGACGTATGCAGTTTCGACGATTTGAAGCAGCGAATGAGGGTTTATCTCAGCCTCGCAGCTTGTCAAGAGATCTTCCAACAACTGAATCGTGTCACCAAGACAATTGACGAAGGAAGGCTGAATATGAAGGCGCATTGCCCTATAGTAACTGATTTTGGGTTAAAGGATAAGGCTACGAAAATTCTCATGTGTTATAATCCAATTTGGCTGCGGATTGGATTGTATATGATTTTTGGTGGTGACTCCTTGGTGTTAAGTGGTGATGTTGCTTCTGATCAGGATGTTGTGTTCTTGAGAATGGTCATTGACGAGCTATTTTTTTCACATGAGGGTTTAGCTAAAGCGTATGCTTATAATAAGTTGGTTGAAGGTGTATATAGGTCAGGTTACTATGAGAATTTGGGGAATGTGATTTTGAAGAGAATTCTGTTACTTGTGCTCGTCCTAGATAAAGCTAAATGCCAGAGTTACCTCCCATTGGAGTATGGTATTGATGGATTGGATGGGGGTTCCCCTTTGTTATTCAGACTAGAATCCTGGATTAAATCAAGTAGTCAGCTGATTCATGAATTTCTATCGTCTGATGTAATGCATGGAGAAGGCAATCTTCTAACACATTTGGTGATTTTAGGTTACAAATTATCTCATCAACAGGAACCTATTGTTGAGTATGATTTCAGGATCAGAGATTTATTTGTAGATCTCCAAGATGGATTAAAATTGTGTAGAGCTATTCAGCTCTTGCAGCATAATTCTTCAATCCTCATGAAAATCGTAGTTCCCTCTGATACTCCAAAGAAAAAGTTGGCAAACTGTAGTCTTGTCCTACAATATATTAGGCATGCTGGTGGGTCACTACTTGATGAAGATGGCATCATGATTGTGGCAGATGATATTGTTAATGGAGACAAAGAACTCACACTTTCTTTGCTGTGGAATATGTTTGTTCATTTGCAGCTACCTCTTTTGGTTGATAAAACAAGTTTAGTTGGGGAAATTTCTGGAATTCGAGGAATTGGCACGGATCTCATAAACGATGCGAATTCTAGCTCTATGGAATTGCTTTTGAATTGGATTCAGGCAGTTTGTAACAATTATGATTGTGTAATTGGCAATTTTCATTCCCTTGTTGATGGCAAAGCTATCTGGTGCTTACTTGATTATTACTTCCAGAAAGAACTTCACAATTCCTGTTCATTGAAGGAAGTTAGTAAGAAAAGTGGCGAAGCATCAATTATGTCAGTCAACGAATATTCAGATGCACTATATAATTTTATATTATCCCAAAAGTTGACTACGTTACTGGGGAACTTCCCAGAGGTGCTTCAAATTAGTGAGCTACTTCAATATAATGGTGCATGCAATGATCGAAGTGTGGTGATTTTGTTGGTTTTCCTAGCAAACCAATTATTTGTGAAGAAAAATTTGGATCACTTAAATTTCCATAAACTCTTGGGTTATGACTGCCAAAGTCCGAACCATAGACATTCGAGGATGCTGCGGTGCCTTTCAAATTCTGAATCAGTAAAAAAGCCTGATGCTTCTGATGTGCATGGAAATGAAGATGCCGCAAGAAAATTCAAGGCCATCCAAGCTTGGTGGCAAGATATGGCTGAAAGAAACTGTATCAACAAACCTGCTGTCTCCAATTTGCAGAGATCCAGTACTGCTGAATGCAGCACCGACATTAGAAGAGAAAATGCTGCAAGAACAATACAACTGCATTTCAGAGGATTGGTTGTCCGGCGCAACTTTCTGAAGATGGTGAATGCTGTTACCCTTTTGCAAACTGTTTTCAGAGCATGGCTAAAAGTGAGGCAAGAGTCAGTCTGCACGATATTATCTACTGTTCAAGTCTGTGACTTTTTATGTGAAATATTGAAGCAATCAGAAGCATATAAGAGATATGCCATGTTTTTCATTCATAGACATTCCTTTTTGAGGTTGAAGAGGTCAGCACAGCTTATCCAGCAAGCAGTTAGGAGTTGGCTCTATCGGAGGCATCGGCAAGAATGTAGTACAAGTCCTGATCTTATGATTTTAGATATGATGGAAGCTGCTATTACTGTTCAGAAATTTGTCCGTGGTTGGCTGGCACGATCTAGATATATTTATCAGCTAGATCAGAAAGAGGAAGCTTTAAATTATTCCAAACAGAAAATCACTTTTGATCTTCAAACAAATGCCGCAATTATCATTCAGCTTGCTTGGAAAAAGTTCATATGCTGCAAGTCTACTCAGAAGCAACACCTGTTTGCAACTAAAATCCAACAAAATTTCCGTAGGTGGTTGTTGAGAAAAAGTTTTTTAAATCAGATTCAAGCTGTCATAAAAATTCAATCTTGTTTTCGAATGTGGAGATGTATAATTGCTTTTCAGCACTTCAAAATTGAGTTTAAGGCAGCTGTTGTCATTCAATCTTTCTTACGGGGATGGTTTGCACGAAAGGATGCTTGTGTGTGTAGAAATCACATTGTTGAAATTCAAAGGCATTGCCGTGGTTGGCTTGTGAAGCGGGGCTTCTTGTTCCAAAGAGACGCTGTAGTAAAGATCCAGTGTGTCATTCGAAGCTTGAAGTGCCAGGAGGCTCTCAATTGCCAGAAAGATGCTGTTTTGGAGATTCAACGCCTTATAAGGGGGCATTTAGCTCGGAATCAGCTACTAGGTAGTGCTTCCAAGTCACGAACTGTTATTCCTATTAGTTGCATTTCAAGACCATTTGGCTTTCGAAGTTTTCAACTGGAACTATTATTATTTTCGGTTGTGAAATTGCAACGATGGTGGAAGGATCTCTTGTTGCTTAAACGAAAGAATAAATCGGCCATCATTATTCAGTCATGTACCCGTGGGTGGATAGCCAGGCGAAAGGCAACCGTTTTCAGACACCATATTGTCATCCAAGAAGATGCCGCATTGGTGATTCAACGCTATATTAGGGGGCATTTAACTCGAAATCGGAATTTAGGTGGTCCTTCTAACCTAAGTGAAGTCGTTCCTGCTGGTTACATTCCGAGACCAGTTGGCTGTCGTAGTTTTCAACTAGAACTATTTTTGCTTTCAGTTCTGAAATTGCAACGATGGTGGAAGGGTCGTCTCTTATTACAGAAATTGATGACAAAGTCTGCCATTGTTATTCAGTCTTGTACTCGTGGGTGGATAGCCAGGCGAAAGGCCACTGTTCAGAAACATCGTATTATTGTCATCCAATCCCATTGGAAAGGTTACCTTGCACGTAAAGAGTCAAAAGAACAGTTGTTGGATTTGCGCTTGAGAATGCAAAAGTCTGCCAGAAATGTGGATGACAGCAAGCGTCTCATAAACAGACTATTGGCAGCGCTTTCAGAGCTACTTAATATGAAGAGTCTTAGTAACATCCTTCATACTTGTTCTACATTGGATATGGCTACAGGACATTCTCAGAAATGCTGTGAAGAACTTGTGGGTGCAGGGGCAATCGATACTTTGTTGCAGCTAATTAAAACGGTCAGCCGGAGTATACCTGATCAGGAGGTTCTAAAGCATGCTTTGTCAACTCTCCGCAATCTCGCTCGCTATCCTCATCTACTACATGTGTTGATCCAAAGTCGTGGTTCTGTACAGATAATTGTCATGGAGTTATTGAGGAATAAAAACGAGGGCTACTTTGTTGCTTGTGAACTTTTGAAGAAGATATGTTCAACTCGTATAGGTGTTGAGACGATATTCAAGTCCCCTGCCCTGCTAAAACGATTGCACGGTCTTGTTGAGGACCTTACACGGAAGGGTATTTACGAGAAAAGAAATGCTAGGTCTACTCCTAACCTGGTTATCAAAGAAAACAGAGAGAGAAGATTGAAGGAGGCTGCTGAGATTCTCAAGCTGATAACAATTTAA 4401 0.4208 MDSKEPPSPSPSPYPRSSSLLKDISNFTTPRRPPFSLTTAQSPATQFFTASKHNTSSSFHCRPSKSSTAASKKLKAFQLEQSQSSRKAQIKKEHSLKSLAKSLSVWLNFLLQNPTSCGCHFSSAAAPSTNGKRDGAPRTSLVGVDSTWRTPKRQRKTCSANEVTDSSFSQLRDSLKDVCSFDDLKQRMRVYLSLAACQEIFQQLNRVTKTIDEGRLNMKAHCPIVTDFGLKDKATKILMCYNPIWLRIGLYMIFGGDSLVLSGDVASDQDVVFLRMVIDELFFSHEGLAKAYAYNKLVEGVYRSGYYENLGNVILKRILLLVLVLDKAKCQSYLPLEYGIDGLDGGSPLLFRLESWIKSSSQLIHEFLSSDVMHGEGNLLTHLVILGYKLSHQQEPIVEYDFRIRDLFVDLQDGLKLCRAIQLLQHNSSILMKIVVPSDTPKKKLANCSLVLQYIRHAGGSLLDEDGIMIVADDIVNGDKELTLSLLWNMFVHLQLPLLVDKTSLVGEISGIRGIGTDLINDANSSSMELLLNWIQAVCNNYDCVIGNFHSLVDGKAIWCLLDYYFQKELHNSCSLKEVSKKSGEASIMSVNEYSDALYNFILSQKLTTLLGNFPEVLQISELLQYNGACNDRSVVILLVFLANQLFVKKNLDHLNFHKLLGYDCQSPNHRHSRMLRCLSNSESVKKPDASDVHGNEDAARKFKAIQAWWQDMAERNCINKPAVSNLQRSSTAECSTDIRRENAARTIQLHFRGLVVRRNFLKMVNAVTLLQTVFRAWLKVRQESVCTILSTVQVCDFLCEILKQSEAYKRYAMFFIHRHSFLRLKRSAQLIQQAVRSWLYRRHRQECSTSPDLMILDMMEAAITVQKFVRGWLARSRYIYQLDQKEEALNYSKQKITFDLQTNAAIIIQLAWKKFICCKSTQKQHLFATKIQQNFRRWLLRKSFLNQIQAVIKIQSCFRMWRCIIAFQHFKIEFKAAVVIQSFLRGWFARKDACVCRNHIVEIQRHCRGWLVKRGFLFQRDAVVKIQCVIRSLKCQEALNCQKDAVLEIQRLIRGHLARNQLLGSASKSRTVIPISCISRPFGFRSFQLELLLFSVVKLQRWWKDLLLLKRKNKSAIIIQSCTRGWIARRKATVFRHHIVIQEDAALVIQRYIRGHLTRNRNLGGPSNLSEVVPAGYIPRPVGCRSFQLELFLLSVLKLQRWWKGRLLLQKLMTKSAIVIQSCTRGWIARRKATVQKHRIIVIQSHWKGYLARKESKEQLLDLRLRMQKSARNVDDSKRLINRLLAALSELLNMKSLSNILHTCSTLDMATGHSQKCCEELVGAGAIDTLLQLIKTVSRSIPDQEVLKHALSTLRNLARYPHLLHVLIQSRGSVQIIVMELLRNKNEGYFVACELLKKICSTRIGVETIFKSPALLKRLHGLVEDLTRKGIYEKRNARSTPNLVIKENRERRLKEAAEILKLITI 1466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2488 1466 Gene3D - 389 495 IPR036872 -
Aed6g2488 1466 SUPERFAMILY Calponin-homology domain, CH-domain 316 569 IPR036872 -
Aed6g2488 1466 SUPERFAMILY ARM repeat 1283 1427 IPR016024 -
Aed6g2488 1466 ProSiteProfiles IQ motif profile. 1043 1072 IPR000048 GO:0005515
Aed6g2488 1466 ProSiteProfiles IQ motif profile. 1143 1172 IPR000048 GO:0005515
Aed6g2488 1466 ProSiteProfiles IQ motif profile. 1237 1265 IPR000048 GO:0005515
Aed6g2488 1466 Gene3D - 520 649 IPR036872 -
Aed6g2488 1466 Pfam Armadillo/beta-catenin-like repeat 1315 1360 IPR000225 GO:0005515
Aed6g2488 1466 ProSiteProfiles IQ motif profile. 925 954 IPR000048 GO:0005515
Aed6g2488 1466 Gene3D - 740 786 - -
Aed6g2488 1466 Gene3D - 922 974 - -
Aed6g2488 1466 Gene3D - 1021 1068 - -
Aed6g2488 1466 Gene3D - 1213 1261 - -
Aed6g2488 1466 Gene3D - 1111 1165 - -
Aed6g2488 1466 Gene3D - 975 1020 - -
Aed6g2488 1466 MobiDBLite consensus disorder prediction 1 21 - -
Aed6g2488 1466 Pfam Calponin homology (CH) domain 403 493 IPR001715 GO:0005515
Aed6g2488 1466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1098 1162 IPR027417 -
Aed6g2488 1466 Coils Coil 1464 1466 - -
Aed6g2488 1466 Gene3D - 858 921 - -
Aed6g2488 1466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 995 1063 IPR027417 -
Aed6g2488 1466 SMART iq_5 824 846 IPR000048 GO:0005515
Aed6g2488 1466 SMART iq_5 1213 1235 IPR000048 GO:0005515
Aed6g2488 1466 SMART iq_5 947 969 IPR000048 GO:0005515
Aed6g2488 1466 SMART iq_5 996 1018 IPR000048 GO:0005515
Aed6g2488 1466 SMART iq_5 858 880 IPR000048 GO:0005515
Aed6g2488 1466 SMART iq_5 924 946 IPR000048 GO:0005515
Aed6g2488 1466 SMART iq_5 1112 1134 IPR000048 GO:0005515
Aed6g2488 1466 SMART iq_5 973 995 IPR000048 GO:0005515
Aed6g2488 1466 SMART iq_5 1042 1064 IPR000048 GO:0005515
Aed6g2488 1466 SMART iq_5 1236 1258 IPR000048 GO:0005515
Aed6g2488 1466 SMART iq_5 1142 1164 IPR000048 GO:0005515
Aed6g2488 1466 SMART iq_5 763 786 IPR000048 GO:0005515
Aed6g2488 1466 SMART iq_5 740 762 IPR000048 GO:0005515
Aed6g2488 1466 SMART arm_5 1315 1360 IPR000225 GO:0005515
Aed6g2488 1466 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 1145 1465 - -
Aed6g2488 1466 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 5 1163 - -
Aed6g2488 1466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 929 995 IPR027417 -
Aed6g2488 1466 ProSiteProfiles IQ motif profile. 1113 1140 IPR000048 GO:0005515
Aed6g2488 1466 ProSiteProfiles IQ motif profile. 741 769 IPR000048 GO:0005515
Aed6g2488 1466 Pfam IQ calmodulin-binding motif 950 964 IPR000048 GO:0005515
Aed6g2488 1466 Pfam IQ calmodulin-binding motif 1215 1233 IPR000048 GO:0005515
Aed6g2488 1466 Pfam IQ calmodulin-binding motif 1240 1256 IPR000048 GO:0005515
Aed6g2488 1466 Pfam IQ calmodulin-binding motif 861 879 IPR000048 GO:0005515
Aed6g2488 1466 Pfam IQ calmodulin-binding motif 1145 1162 IPR000048 GO:0005515
Aed6g2488 1466 Pfam IQ calmodulin-binding motif 1115 1132 IPR000048 GO:0005515
Aed6g2488 1466 Pfam IQ calmodulin-binding motif 929 945 IPR000048 GO:0005515
Aed6g2488 1466 Pfam IQ calmodulin-binding motif 976 993 IPR000048 GO:0005515
Aed6g2488 1466 Pfam IQ calmodulin-binding motif 1045 1063 IPR000048 GO:0005515
Aed6g2488 1466 Pfam IQ calmodulin-binding motif 1001 1017 IPR000048 GO:0005515
Aed6g2488 1466 ProSiteProfiles IQ motif profile. 974 1003 IPR000048 GO:0005515
Aed6g2488 1466 ProSiteProfiles IQ motif profile. 1214 1241 IPR000048 GO:0005515
Aed6g2488 1466 ProSiteProfiles IQ motif profile. 859 888 IPR000048 GO:0005515
Aed6g2488 1466 PANTHER UNCHARACTERIZED 5 1163 - -
Aed6g2488 1466 ProSiteProfiles Calponin homology (CH) domain profile. 373 495 IPR001715 GO:0005515
Aed6g2488 1466 PANTHER UNCHARACTERIZED 1145 1465 - -
Aed6g2488 1466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1195 1260 IPR027417 -
Aed6g2488 1466 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1326 1373 IPR000225 GO:0005515
Aed6g2488 1466 Gene3D - 1264 1435 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2488 905 1033 Myosins gene family AT5G43900 32.374 2.01e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2488 K16743 - gmx:100788871 1900.95