Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2479 ATGGAGACGAACACACTCTCACTGTTGTGGCCACTTCCTACTTCACGTGTTGTTTCATCTGAAAAGTTATTAAGTCCTACTACCTGTTACATCCTTCGTTCACATAACCATTTTCTCAAACACTTATCCTCCACTATTAACCACCTCAACTTCAGAACTCCACAAGCCATTCTAAATCCTTCTTCTCCCATAGCCCCTTCAGAGGTGACCACTCCCACTCTCAGAGAATTATGCCAATCGCATGTTCCGGAACATATACTGCAAAGGCAATTTCAAAATCTCTCCACTTTTCTCTTTCTTTGCTGCGTTGTCTTGTGCTCAGAAAATTTGACAAATATGTTTCAGGATGGAAGAGATTGGATATGTAATGCCTACAGATATCCAGAGGGAAGCATTGCCTTACCTTTTTTTCCGGGCGTGACTGCATACTTCATGCTCAGGTTATTTTTCTGTTTTACAGGTTCTGGGAAGACGCTCACTTACCTGCTTTTGATTCATTCCATCATCATTGCTGCAAAATCTTCCGTGCAAGCCCTAGTTCTGGTGCCCACCCGGGAACTTGGCATGCAAGCAGAGCCTCCAACAATAATGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATATTTTTTCACTTGAAACTGTGCGGGTGCTGATTGTTGATGAGGTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTACGAAAGATTTTGACTTCATATTCATCTTGCAATAACCGTCAGACAGTCTTTGCCAGTGCATCTATACCACAGCACAATCGATTTATTCATGACTCTGTGCAGCAGAAATGGACAAAGAGAGATGTGGTCCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAATGTGTGATACCAAAAGAAAACTACAAACCCTGTTATCCTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGCTGAGCAGTCTGAGAAGTCAAAAAAAGCTGGAAAGGCTCCATCAACATCCCTTCTGATTGACTTTTTGAAGATATCATACCAAGGTGATTTAGATATCCTCCTCCTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTGTTGGAGGTTAGAAAAGGAGGTGGCTATCTTCTTGTGGCAACAGATATAGCTGCTCGGGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCCACCAAGGACTGCTGTGGATTATCTTCATCGAGCAGGGCGAACTTGTAGAAAACCCTTTTCTGACATCAATTGTACTGTTACCAGCATTATAGTTCCAGATGAGCGATTTGTTTTGCAGAGATATGAAAATGAGTTGATGTTTAACTGTGAAGAGCTTATTCCATAA 1398 0.4142 METNTLSLLWPLPTSRVVSSEKLLSPTTCYILRSHNHFLKHLSSTINHLNFRTPQAILNPSSPIAPSEVTTPTLRELCQSHVPEHILQRQFQNLSTFLFLCCVVLCSENLTNMFQDGRDWICNAYRYPEGSIALPFFPGVTAYFMLRLFFCFTGSGKTLTYLLLIHSIIIAAKSSVQALVLVPTRELGMQAEPPTIMVATVGSLCQMLERHIFSLETVRVLIVDEVDCIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRLYHRFIMCDTKRKLQTLLSLIQSDAPESGIIFVAEQSEKSKKAGKAPSTSLLIDFLKISYQGDLDILLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDPPRTAVDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELMFNCEELIP 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2479 465 CDD SF2_C_DEAD 298 427 - -
Aed6g2479 465 Pfam DEAD/DEAH box helicase 153 190 IPR011545 GO:0003676|GO:0005524
Aed6g2479 465 Gene3D - 41 190 IPR027417 -
Aed6g2479 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 431 IPR027417 -
Aed6g2479 465 Pfam DEAD/DEAH box helicase 194 263 IPR011545 GO:0003676|GO:0005524
Aed6g2479 465 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 153 190 - -
Aed6g2479 465 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 190 464 - -
Aed6g2479 465 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 308 465 IPR001650 -
Aed6g2479 465 SMART helicmild6 345 429 IPR001650 -
Aed6g2479 465 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 279 IPR014001 -
Aed6g2479 465 Pfam Helicase conserved C-terminal domain 308 427 IPR001650 -
Aed6g2479 465 Gene3D - 293 464 IPR027417 -
Aed6g2479 465 Gene3D - 191 277 IPR027417 -
Aed6g2479 465 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 153 190 - -
Aed6g2479 465 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 190 464 - -
Aed6g2479 465 SMART ultradead3 106 300 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2479 Aed-Chr6 26177029 26180974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2479 153 464 Eukaryotic Initiation Factors Gene Family AT1G72730 25.141 4.68e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2479 - - gmx:100786205 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2479 6 26177029 26180974 Aed6g2479 6 26177029 26180974 ECH