Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2478 ATGGCAGATTTCATCTCTTCCTCTTCTTCTTCTCCCTTACCTCTAACTTTGACTATGTCACACATTTCAACTCCCTCATCTTCTGCGCCTTTCGACGACAGTTCCGAGGACGCCTGCAGCATATGTCTAGAACCATTCAGCACCCATGACCCTGCCACCATTACCAGTTGCAAACATGAATATCATCTGCACTGTATTCTTGAATGGTCGCAGAGAAGCAAAGAATGCCCAATATGTTGGCAGTTACTTATCTTGAAAGACCCTGCCAGCCAAGAGCTTCTAAAAGCAGTGGAGGCTGAAAAACCCTTTAGTTCAAGAACTGTATATTCACATGCATTCACTGATTCATGTGGCCCCCTTCAACGGCTTAACAGTGACCAAGATGATTCTTGTTCAGATGATTCTGATTTTGATGAACAACTTATGCAGCACCTAGTTTCTTCTGCAAGTAGAGCTCGTTATATCTGCAGACGGGAGAGGCAGCAGAGATCCCCTGGAGCTGCAGGTCCTTCAGACCCAGAGGTTCTTGTTTTTAACTCTGCTACTGCTACTGCTACTGCTACTGTTATGCATGCATCAGGGATGATGCAACCAACACTTACTACAACTTCACCAACCTCTGTTGGCATGGTTACAACAAATACTTCTTCTGAGAGTGACATGCCTTCCAAACCCAGAGTTATCTATAGCCAGCCATCACCTTCTGAGATGTTCTCCTTCCCCGAGTCCTTCAAATCCAAACTTTCTGCTGCTTCAGCCAGATGTAAGGAATCAATTTCAAAAAATAGTCGTGGTCTTAAAGAGAAGTTGATTGCACGTAATGCCTCAGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCAGGTGTTGCAAGAATGATTGAACGCCTTGATCTTACCTCAAAACGGTCCTCAACTCCTCTCATCCCTGTCCAAGAGAATGTTACTACTTCAAATGCTTCCTCACTTGATTCTACCTTGGTTGCTGTTGGAGTGGAAACTCCTCCTTCATGCCTTCAGGAAGAGGCCCGCAATGCAAGAGACGACTTGATAACCAATGTGCCTGTTGGTATGCGTCCTGCATTTGGTCAATAA 1110 0.4505 MADFISSSSSSPLPLTLTMSHISTPSSSAPFDDSSEDACSICLEPFSTHDPATITSCKHEYHLHCILEWSQRSKECPICWQLLILKDPASQELLKAVEAEKPFSSRTVYSHAFTDSCGPLQRLNSDQDDSCSDDSDFDEQLMQHLVSSASRARYICRRERQQRSPGAAGPSDPEVLVFNSATATATATVMHASGMMQPTLTTTSPTSVGMVTTNTSSESDMPSKPRVIYSQPSPSEMFSFPESFKSKLSAASARCKESISKNSRGLKEKLIARNASVKELSKGVQREMNAGIAGVARMIERLDLTSKRSSTPLIPVQENVTTSNASSLDSTLVAVGVETPPSCLQEEARNARDDLITNVPVGMRPAFGQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2478 369 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 2 324 - -
Aed6g2478 369 Pfam Ring finger domain 38 79 IPR001841 -
Aed6g2478 369 ProSiteProfiles Zinc finger RING-type profile. 39 79 IPR001841 -
Aed6g2478 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 93 IPR013083 -
Aed6g2478 369 SUPERFAMILY RING/U-box 31 86 - -
Aed6g2478 369 SMART ring_2 39 79 IPR001841 -
Aed6g2478 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 2 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2478 Aed-Chr6 26173175 26175890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2478 33 87 C3H Transcription Factor Family AT4G00335 45.455 3.03e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2478 K19043 - gmx:100775754 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2478 6 26173175 26175890 Aed6g2478 6 26173175 26175890 ECH