Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2469 ATGGGAATTTCATGGAGTAACAGTAACAGTAACAGAAGAATAAGAAGAAACACTTACTTTCATCCTCATCATCCTCCACCCCATTACTATTACCATGTACCGCCACCACCTCCACAAGGTTACTTTTTTACCTCAACCAACCCTTCGGATTCTACCACCACAGGCTACGTGGGTCCTCCTCAGTATTACCCAAATGGCTACACTGCCAATTCTGTGATGCTTCATTATTCGCCAGAACCAGCACCAGCACCAGCACCAGCCTATGTTGATCATCAAGCCACTAAGAAGATAAGGAACAATGTCAATTTGCATAAACACACTCTGCACCTTCTCCTAGATCCTAACAATCCAGATCACCACTTGATTTCCTTTGATTTCGACGCCCTCTATGATGGCAGCATTACAATCTTCTACTTAGCCAAAGAAGAAGAAAAATGTAGGTTTGTTCCACTATGTCCTGATGTGTTTGAGCCAATCACATTCCCCTTTCAAAAAGGAGCTGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGACCTAGGTTTTTTTGAGTTGGATGATCTTTCTCAGCCCTCACCCGCAGAAGATGAATTTCCCCTGGTTATATGTGCTGAAACTACTAGTAATTCCGTACTAGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTAGAGAAAAGCAATGTTATTGGTCCTTTCCAGGTTAAAGTAGTTAGGCAGATTCTGTGGATTGACGATATTCGTTATGAGCTGAGAGAGTTATTTGGAATGGGAAGTTCAACAGCTGCGGATTTTGATCATAATGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCCAAGGACACTGCTGTCTTACCCTGCCGACATATGTGTATGTGCGGTGAGTGTGCCAAAGCTTTGCGGCTTCAATCAAATAAATGCCCTATATGTCGCCAACCAATTGAGGAACTTATAGAGATCAAGATAAACAATGGCAATCAATGA 996 0.4277 MGISWSNSNSNRRIRRNTYFHPHHPPPHYYYHVPPPPPQGYFFTSTNPSDSTTTGYVGPPQYYPNGYTANSVMLHYSPEPAPAPAPAYVDHQATKKIRNNVNLHKHTLHLLLDPNNPDHHLISFDFDALYDGSITIFYLAKEEEKCRFVPLCPDVFEPITFPFQKGAGQKFCQPSGTGIDLGFFELDDLSQPSPAEDEFPLVICAETTSNSVLDASPHMQITQAVLEKSNVIGPFQVKVVRQILWIDDIRYELRELFGMGSSTAADFDHNDPGKECVICMTEPKDTAVLPCRHMCMCGECAKALRLQSNKCPICRQPIEELIEIKINNGNQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2469 331 Pfam Zinc finger, C3HC4 type (RING finger) 274 320 - -
Aed6g2469 331 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 331 - -
Aed6g2469 331 PANTHER MAHOGUNIN 1 331 IPR045194 GO:0061630
Aed6g2469 331 ProSiteProfiles Zinc finger RING-type profile. 276 315 IPR001841 -
Aed6g2469 331 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 275 315 IPR045195 -
Aed6g2469 331 SMART ring_2 276 314 IPR001841 -
Aed6g2469 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 325 IPR013083 -
Aed6g2469 331 SUPERFAMILY RING/U-box 241 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2469 Aed-Chr6 26104785 26107404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2469 28 331 C3H Transcription Factor Family AT3G06140 54.019 9.05e-104 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2469 - - gmx:102665712 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2469 6 26104785 26107404 Aed6g2469 6 26104785 26107404 ECH