Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2462 ATGTCCGGCCCATCACACTTTCGGGTTGTTTCAGACTACATGGGCCATAAGCCCGTTAACATTCAGATTTTGGCAGCAGAGATGTCTTCTTCACCTTCACAATTTTCACATTGGAAACCGATGACTACTACTCAAATTCAATATGTATCCCTTGGGCTTGGCCGAATCGGAATTTCGAAGCAATCAAAGCGTGCTAGTGCTACTATTCCTTCTGCCTCTTCTTCTCTTCTTCTTCTTCTTAGCAATCGCAACGCGTCGTTTTGCTGCAGCTCTAGCTCTACCCCCACCTCTTCTCTCCAATGCAATTTTCCTTCTTCACTCAATATCTTCGTCAAAGGGCTTCCTCTCTCAACCTCCGAAGGACGTTTGATGAAGGTGTTTTCCGAGTTTGGTGAAGTTACTCTAGTTCAGCTTCCAATAGATAAAGAGTCTGGACAGTCTTTAGGATTTGCATATATTTGGTATGTCAAGGAAGAGTCTGCACAATTGGCTGTGCAAGAGATGAATGGAAAGTTTTTTGATGGCAGGTTTATTTATGTTACAATTGCAAAGCCTGGATCTTCAAAAAGTTCCAAGAGAGCAACAGCCTACAAATTTTAA 600 0.425 MSGPSHFRVVSDYMGHKPVNIQILAAEMSSSPSQFSHWKPMTTTQIQYVSLGLGRIGISKQSKRASATIPSASSSLLLLLSNRNASFCCSSSSTPTSSLQCNFPSSLNIFVKGLPLSTSEGRLMKVFSEFGEVTLVQLPIDKESGQSLGFAYIWYVKEESAQLAVQEMNGKFFDGRFIYVTIAKPGSSKSSKRATAYKF 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2462 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 178 IPR000504 GO:0003723
Aed6g2462 199 Gene3D - 60 196 IPR012677 -
Aed6g2462 199 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 58 199 - -
Aed6g2462 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Aed6g2462 199 SUPERFAMILY RNA-binding domain, RBD 97 190 IPR035979 GO:0003676
Aed6g2462 199 SMART rrm1_1 108 181 IPR000504 GO:0003723
Aed6g2462 199 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 58 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2462 Aed-Chr6 26043453 26046333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2462 108 198 Eukaryotic Initiation Factors Gene Family AT4G34110 31.868 4.36e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2462 - - gmx:100791917 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2462 6 26043453 26046333 Aed6g2462 6 26043453 26046333 ECH