Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2449 AGAGTACCGAGTCTTCTTTCTTATTTGCGTTGCGTGTTGTCATTCAGTTCAGAACGGAAAAGCACCGGCGCAGCTTCCCTGAGGCTTCTCTTCTCTTTTGTGACCATGGTGAGGGTTAGCGTGTTGAACGATGCTCTGAAGAGCATGTACAATGCTGAGAAAAGGGGCAAGCGCCAAGTCATGATTAGGCCATCTTCCAAAGTCATTATCAAATTCCTTTTTGTGATGCAAAAGCACGGATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAACTGAACGGTAGACTGAACAAATGTGGGGTTATTAGTCCCCGTTTTGATGTGGGCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCACGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTACTGGGCTTCTTCTACTAG 498 0.4598 RVPSLLSYLRCVLSFSSERKSTGAASLRLLFSFVTMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLFVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2449 165 PANTHER 40S RIBOSOMAL PROTEIN S15A 36 165 IPR000630 GO:0003735|GO:0005840|GO:0006412
Aed6g2449 165 Gene3D - 36 104 - -
Aed6g2449 165 PANTHER BNAA02G06730D PROTEIN 36 165 - -
Aed6g2449 165 Gene3D - 105 165 - -
Aed6g2449 165 Hamap 30S ribosomal protein S8 [rpsH]. 37 165 IPR000630 GO:0003735|GO:0005840|GO:0006412
Aed6g2449 165 SUPERFAMILY Ribosomal protein S8 39 165 IPR035987 GO:0003735|GO:0005840|GO:0006412
Aed6g2449 165 ProSitePatterns Ribosomal protein S8 signature. 135 152 IPR000630 GO:0003735|GO:0005840|GO:0006412
Aed6g2449 165 Pfam Ribosomal protein S8 42 165 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2449 Aed-Chr6 25991633 25993025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2449 36 165 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 97.692 2.02e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2449 K02957 - thj:104809034 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2449 6 25991633 25993025 Aed9g0632 9 4396235 4398659 PCT