Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2413 ATGGATGGATTGGAGCAGAGACAGAGTTGGTGGGCCAATATGCCTGAGGAGCTTCTGAGAGAGGTTCTCCTCCGAATTGAGTCGTCGGAGGCCACGTGGCCGGCGCGGAGGAGCGTGGTGGCTTGTGGTGGAGTGTGCCGCACATGGAGGCTCATCGTCAAGGAGATTGTGAAGCCACCTCAACTCTCTTCCAACATAACCTTCCCCATCTCTCTCAAACAGCCTGGCCCTAGGGAACATCTACTTCAGTGCTTCATTAGGCGTAACAGTGCCACACACACATTTTCTCTGTTTCTCACTTTATCTACTGCACTAGTTGATGATGGAAAGTTCCTTCTGGCTGCACGCAAGTTCAGACGCCCTACCTGCACAGATTATATTATCTCCCTGGATGCAGATGACATGTCCAGAGAAAGCAATGCCTATGTTGGGAAGTTGAGATCAAATTTTTTGGGAACCAAGTTCACAATCTATGATAGCCAGCTGCATCATGTAGGGGCAAAGATGACAAAAAGTTGCTCCACTAAGCTGGTGAATGCTAAACAAGTTTCACCTAGGGTCCCTACAGGCAACTATCCAGTTGCTCACATCTCATATGAATTGAATGTATTAGGCTCCAGCAGGGGACCAAGGAGAATGCATTGTGTCATGGATACTATTCCCGCTTCTGCTATTGAACCAAGAGGGGTAGCCCCTTCTCAGACCAATTTTTCTGTTAGTAACATAGATACTTCATTCCCATTTTTTCAGACAAACTCAACTAGTCTGGAAAACTCCATATCTGGAGACCATAGCAATAAAAAAGATGATGTGCTAGTGTTGCGAAACAAGGCTGCGAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGGCGAGTGACAATTGCTTCGGTTAAAAACTTTCAGCTGGCTGTTTCGCCAGAAAATGGACATGCTGGATCACAAGAGGATGAGGTCATCCTTCAATTTGGAAAAGTTGGGAAGGACTTGTTTACAATGGATTACCGGTACCCTATCTCAGCATTTCAGGCCTTTGCAATCTGCCTCAGCAGCTTCGCTACCACGGTTGCTTGTGAATGA 1089 0.4692 MDGLEQRQSWWANMPEELLREVLLRIESSEATWPARRSVVACGGVCRTWRLIVKEIVKPPQLSSNITFPISLKQPGPREHLLQCFIRRNSATHTFSLFLTLSTALVDDGKFLLAARKFRRPTCTDYIISLDADDMSRESNAYVGKLRSNFLGTKFTIYDSQLHHVGAKMTKSCSTKLVNAKQVSPRVPTGNYPVAHISYELNVLGSSRGPRRMHCVMDTIPASAIEPRGVAPSQTNFSVSNIDTSFPFFQTNSTSLENSISGDHSNKKDDVLVLRNKAARWHEQLQCWCLNFHGRVTIASVKNFQLAVSPENGHAGSQEDEVILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFATTVACE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2413 362 Gene3D Tubby Protein; Chain A 69 362 IPR025659 -
Aed6g2413 362 PANTHER TUBBY-RELATED 6 362 - -
Aed6g2413 362 Pfam F-box domain 11 57 IPR001810 GO:0005515
Aed6g2413 362 Pfam Tub family 72 357 IPR000007 -
Aed6g2413 362 ProSitePatterns Tub family signature 1. 292 305 IPR018066 -
Aed6g2413 362 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 6 362 - -
Aed6g2413 362 SUPERFAMILY Tubby C-terminal domain-like 60 362 IPR025659 -
Aed6g2413 362 SUPERFAMILY F-box domain 7 54 IPR036047 GO:0005515
Aed6g2413 362 PRINTS Tubby superfamily signature 142 166 IPR000007 -
Aed6g2413 362 PRINTS Tubby superfamily signature 126 142 IPR000007 -
Aed6g2413 362 PRINTS Tubby superfamily signature 340 362 IPR000007 -
Aed6g2413 362 PRINTS Tubby superfamily signature 191 218 IPR000007 -
Aed6g2413 362 PRINTS Tubby superfamily signature 319 338 IPR000007 -
Aed6g2413 362 PRINTS Tubby superfamily signature 274 291 IPR000007 -
Aed6g2413 362 PRINTS Tubby superfamily signature 292 308 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2413 Aed-Chr6 25724533 25727150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2413 7 362 TUB Transcription Factor Family AT2G47900 66.759 6.40e-178 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aed6g2413 Tub 2.7e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2413 K19600 - gmx:100794141 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2413 6 25724533 25727150 Aed6g2413 6 25724533 25727150 ECH
Aed6g2413 6 25724533 25727150 Aed9g0329 9 2272944 2278163 PCT