Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2411 ATGGGGTGTGTGTTTGGGAAAGAAGCATCAAAGAGGAAAGAGGAAGTGGTAGTTGCAAGAGCAGAAGAGGGTGTGGTTCAGAACGGTGGGAATGTGAAGGTGGGTGGAGAAGAGGAGAAGAGCAAGCGCCCAAAAGGGGAGAGAAAGCGATCTTCGAAGCCGAATCCGAGGTTGAGCAATCCACCTAACCATGTACATGGTGAGCAAGTTGCTGCAGGATGGCCCTCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATTAATGGATTGGTCCCTAGAAGAGCTGACACTTTTGAGAAGCTTAATAAGGTTGGACAAGGTACATATAGCAATGTTTACAAAGCAAAGGATACTTTGACAGGGAAAATTGTTGCCCTAAAGAAGGTCCGCTTTGACAATTTAGAGCCCGAGAGTGTGAAATTTATGGCCAGAGAGATTCTTATTCTGCGCCATCTGGATCATCCCAATGTTATCAAACTGGAAGGTTTAGTGACTTCAAGGATGTCATGCAGTTTGTACCTTGTGTTTGAATACATGGATCATGATTTGGCTGGACTTGCTACAAGCCCCACAATTAAGTTCACAGAGTCTCAGGTTAAATGTTACATGCATCAGCTACTTTCTGGATTGGAACACTGTCACAATCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAACCTTCTTATTGACAGTGAAGGAATTCTTAGGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCCAATCACAAGCACCCTATGACCAGCAGGGTGGTTACTTTATGGTATCGACCTCCAGAACTTCTCCTTGGATCCACTGATTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGCAAGCCTATTATGCCTGGTCGAACTGAGGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGATGAATATTGGAAAAAATTGAAGTTGCCACATGCTACCATTTTTAAGCCACGACAATCATACAAGCGGTGCATAGCAGAGACATTTAAGAATTTTCCAGCATCATCCCTGCCACTAATTGAGATCCTTCTTGCAATTGATCCAGCTGAACGTCAAACTGCCACAGCTGCATTGCAAAGTGAATTCTTTACAACAAAACCTACTGCCTGTGAACCCTCTAGTCTTCCAAAATATCCTCCCAGCAAGGAGATGGATACAAAGCTACGGGATGAAGAAGCTAGAAGATTGAGAGCTGCTGGCAAAGTTAATGCTGCTGGTGTCAAGAAATCACGCCCACGTGTTCGAGGTGGAAGGGGAATTCCAGTTCCAGATTCCAATGCTGAGTTGCAAGCAAATGTTGATAGATGGCGACTGGTAACACATGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCTCATGAAGATGGAACTCTAGGCTATCCTTTGGGTTCTTCACATCACATGGATCCAATTTTTGATCCTCCTGATGTTCCATTTAGTTCCACAAACTTGTCATATCCTAAAGCAAATTTCCAAACCTGGTCTGGCCCATTGGTGGAACCTAGTGTGGATGCACCAAGGAGAAAGAAGAACATGGCAGGGAATGGACACACACAATCAAAGAAGGACTCTTATAGATAG 1641 0.4455 MGCVFGKEASKRKEEVVVARAEEGVVQNGGNVKVGGEEEKSKRPKGERKRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLNKVGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRHLDHPNVIKLEGLVTSRMSCSLYLVFEYMDHDLAGLATSPTIKFTESQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDSEGILRIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGSTDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKLKLPHATIFKPRQSYKRCIAETFKNFPASSLPLIEILLAIDPAERQTATAALQSEFFTTKPTACEPSSLPKYPPSKEMDTKLRDEEARRLRAAGKVNAAGVKKSRPRVRGGRGIPVPDSNAELQANVDRWRLVTHANAKSKSEKFPPPHEDGTLGYPLGSSHHMDPIFDPPDVPFSSTNLSYPKANFQTWSGPLVEPSVDAPRRKKNMAGNGHTQSKKDSYR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2411 546 ProSiteProfiles Protein kinase domain profile. 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g2411 546 PANTHER CELL DIVISION PROTEIN KINASE 24 531 - -
Aed6g2411 546 SMART serkin_6 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g2411 546 SUPERFAMILY Protein kinase-like (PK-like) 92 385 IPR011009 -
Aed6g2411 546 MobiDBLite consensus disorder prediction 462 546 - -
Aed6g2411 546 Pfam Protein kinase domain 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g2411 546 PANTHER CYCLIN-DEPENDENT KINASE 24 531 - -
Aed6g2411 546 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Aed6g2411 546 Gene3D Phosphorylase Kinase; domain 1 85 179 - -
Aed6g2411 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Aed6g2411 546 MobiDBLite consensus disorder prediction 498 517 - -
Aed6g2411 546 MobiDBLite consensus disorder prediction 419 443 - -
Aed6g2411 546 MobiDBLite consensus disorder prediction 27 67 - -
Aed6g2411 546 Gene3D Transferase(Phosphotransferase) domain 1 180 420 - -
Aed6g2411 546 CDD STKc_CDK9_like 97 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2411 Aed-Chr6 25715806 25720474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2411 92 419 Core Cell Cycle Gene Families AT5G10270 51.744 1.27e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed6g2411 Pkinase 1.7e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2411 6 25715806 25720474 Aed6g2411 6 25715806 25720474 ECH
Aed6g2411 6 25715806 25720474 Aed9g0331 9 2294226 2300017 PCT