Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2405 ATGGGGAGGCCATCCAAGGCGCAGGTTTCGAATGACTCTTCCTCCTCCGAGGAAGAAGACGCCGCCGCCACCGCCGCCAACCACCAGATCGAGGAGGACGACGAGGAACTCGAAGCGGTGGCTCGCTCCGCTAGCTCCGACGACGACGATAATTCGCCCGATGATGCCGCTGAAGACGACGACGAGGATAAACAGGATGAGAGTAATGTTGATCCTGAAGTTAGCAAGCGTGAGAAGGCCAGATTGAGAGAAATGCAACAGCTGAAGAAACAGAAGGTTCAGGAGATATTGGATGAACAAAATGCGTCCATTGATGCTGATATGAATAATAGAGGAAAGGGCCGATTGAATTATCTCCTACAGCAAACTGAGCTGTTTGCTCATTTTGCCAAGGGTGGCCAATCTTCTCAAAAGAAGGCAAAGGGAAGGGGTCGCCATGCATCAAAAGTAACTGAAGAAGAGGAAGATGAAGAATACCTTAAAGGGGAAGAAGATGGTTTAGCAAGCACACGGCTGGTGTCTCAACCATCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGACTTGGCAAAACCTTACAAACAATATCTTTGTTAGGCTACTTACATGAGTTCAGAGGAATAACAGGCCCACATATGGTGGTTGCTCCAAAATCTACACTAGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTATACGTGCTATAAAGTTCCTTGGGAACCCTGATGAAAGGAAACACATCAGAGAAGAGTTACTCATTGCTGGTAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGGCGATTTAGTTGGCGCTACATAATTATTGATGAGGCTCATCGAATCAAGAATGAGAACTCACTCCTGTCCAAAACAATGAGGCTATACAATACAAACTATCGACTCCTCATAACTGGCACACCATTGCAGAACAATCTTCACGAACTCTGGGCTCTTCTAAACTTTCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGGTACTCCGTCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGATTGCCACCAAAAAAGGAAACCATTCTCAAAGTAGGCATGTCACAAATGCAGAAACAGTATTATAAGGCATTACTGCAGAAGGATCTGGAGGTTGTTAATGCAGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAGCTACGTAAATGTTGTAATCACCCATATCTCTTTCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGACCATCTCATTACAAATGCTGGTAAAATGGTTCTACTGGATAAGTTACTTCCTAAACTAAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATCTCATGTTTTGTGGATACCAATATTGTCGCATTGATGGCAATACGGGTGGAGACGATCGGGATGCTTCCATTGATGCTTTCAACAAACCAGGAAGTGAAAAATTTGTCTTCTTGTTATCTACTCGTGCTGGAGGCCTTGGCATTAATCTTGCTACTGCTGATGTTTATACTATTGAGGAAAAAGTCATTGAAAGGGCTTATAAAAAGCTTGCACTTGATGCCCTGGTGATTCAGCAAGGGCGATTAGCAGAACAGAAGACTGTTAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCCGAGCTTGATGCTAAGATGAAAAAATTCACTGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGATGATAAGGATGAAAACAAATTTGATTTCAAAAAAATCGTGAGTGAAAACTGGGTCGAGCCACCAAGAAGAGAACGGAAGCGCAATTACTCGGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGCCCTACTAAACCAAAAGAGCCTCGTATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAATACACAAAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGCTACCTCATGCAAACACATCAGAAAAATCAGGTGAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTAGAAGAAAAGGAGCAGTTGCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAAAAGTATGGCCGCAATGATATAAAAGGTATTGCTTCTGAGATGGAAGGAAAAACACAAGAGGAAGTTGAAAGATATGCAAAAGTCTTCAAAGAAAGATACAAGGAATTAAATGACTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGGCAAGAATATCCCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGATCGATTCATGATATGTATGATTCACAAACTTGGATATGGTAATTGGGATGAGTTGAAGGCAGCTTTCCGAATGTCACCTTTGTTTCGATTTGATTGGTTTGTCAAGTCTCGCACAACACAAGAAATTACAAGGAGGTGTGACACCCTCATTCGGCTGGTAGAGAAGGAAAATCAAGAATATGATGAGAGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCGGCCAAGAGCATGACCCCATCAAAGCGTTCTATGCCTAGACAGACTGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGGGCTCGAGTTTTGATAAGAGCGAGGGTCATTAA 3072 0.4193 MGRPSKAQVSNDSSSSEEEDAAATAANHQIEEDDEELEAVARSASSDDDDNSPDDAAEDDDEDKQDESNVDPEVSKREKARLREMQQLKKQKVQEILDEQNASIDADMNNRGKGRLNYLLQQTELFAHFAKGGQSSQKKAKGRGRHASKVTEEEEDEEYLKGEEDGLASTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVIRAIKFLGNPDERKHIREELLIAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEHEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFCGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDKDENKFDFKKIVSENWVEPPRRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQVKDSIDVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIKGIASEMEGKTQEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQEITRRCDTLIRLVEKENQEYDERERQARKEKKLAAKSMTPSKRSMPRQTESPSLKKRKQLTMDDYLGSSFDKSEGH 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2405 1023 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 360 IPR014001 -
Aed6g2405 1023 SUPERFAMILY Homeodomain-like 799 849 IPR009057 -
Aed6g2405 1023 MobiDBLite consensus disorder prediction 967 984 - -
Aed6g2405 1023 CDD SF2_C_SNF 484 586 - -
Aed6g2405 1023 SMART ultradead3 179 371 IPR014001 -
Aed6g2405 1023 MobiDBLite consensus disorder prediction 967 1023 - -
Aed6g2405 1023 Gene3D iswi atpase 851 883 - -
Aed6g2405 1023 Pfam HAND 709 792 IPR015194 GO:0003677|GO:0006338|GO:0031491
Aed6g2405 1023 ProSiteProfiles SANT domain profile. 795 847 IPR017884 -
Aed6g2405 1023 PANTHER SNF2/RAD54 HELICASE FAMILY 575 1014 - -
Aed6g2405 1023 PANTHER SNF2/RAD54 HELICASE FAMILY 7 574 - -
Aed6g2405 1023 SUPERFAMILY Homeodomain-like 851 973 IPR009057 -
Aed6g2405 1023 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 575 1014 - -
Aed6g2405 1023 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 7 574 - -
Aed6g2405 1023 MobiDBLite consensus disorder prediction 1 22 - -
Aed6g2405 1023 SMART helicmild6 514 619 IPR001650 -
Aed6g2405 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 398 IPR027417 -
Aed6g2405 1023 Coils Coil 953 980 - -
Aed6g2405 1023 MobiDBLite consensus disorder prediction 1 80 - -
Aed6g2405 1023 MobiDBLite consensus disorder prediction 50 68 - -
Aed6g2405 1023 MobiDBLite consensus disorder prediction 131 162 - -
Aed6g2405 1023 SMART sant 898 959 IPR001005 -
Aed6g2405 1023 SMART sant 796 845 IPR001005 -
Aed6g2405 1023 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 708 798 IPR036306 GO:0003677|GO:0006338|GO:0031491
Aed6g2405 1023 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 662 IPR001650 -
Aed6g2405 1023 Gene3D ISWI, HAND domain 697 795 IPR036306 GO:0003677|GO:0006338|GO:0031491
Aed6g2405 1023 Gene3D - 796 850 - -
Aed6g2405 1023 Gene3D - 404 574 IPR027417 -
Aed6g2405 1023 Gene3D - 575 659 IPR027417 -
Aed6g2405 1023 Gene3D - 184 399 IPR038718 -
Aed6g2405 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 644 IPR027417 -
Aed6g2405 1023 CDD DEXHc_SMARCA1_SMARCA5 180 400 IPR044754 GO:0005524
Aed6g2405 1023 Gene3D - 884 987 - -
Aed6g2405 1023 Pfam SLIDE 853 963 IPR015195 GO:0003677|GO:0005634|GO:0006338
Aed6g2405 1023 Pfam Helicase conserved C-terminal domain 486 574 IPR001650 -
Aed6g2405 1023 Pfam SNF2-related domain 196 463 IPR000330 GO:0005524|GO:0140658
Aed6g2405 1023 CDD SANT 799 843 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2405 Aed-Chr6 25678673 25686944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2405 483 572 RAD5 or RAD16-like Gene Family AT5G22750 34.444 1.44e-07 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed6g2405 SNF2_N 3.3e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2405 K11654 - gmx:100791510 1880.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2405 6 25678673 25686944 Aed6g2405 6 25678673 25686944 ECH
Aed6g2405 6 25678673 25686944 Aed9g0341 9 2337571 2345232 PCT