Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2399 ATGGAGCGGTACGGCCGGGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTGGCCGCCGGCGCCGACGCCGGCCTCGAAGAGTCCTCGTGGCAACTCGGATTACCCGGTGCCGAATCGTACCCTCTGCGTCCCGATGAGGCCGATTGTATCTACTATTTGAGAACGGGTTTTTGCGGTTACGGCACACGCTGTCGTTTCAACCATCCTCGTGACCGTGCCGCGGTTATCGGAGCTGCGGCGAGGACTGGAGGGGAGTTTCCAGAGCGCGTGGGACAGCCTGTGTGCCAGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGCCTGCGGGTGTCCAAGTTCTAGCACCAACACCAGTTCCTCCAGTTTCGCCTATGTCTGTACCTGTACCTTCACCAATGTATCCAACTGTACAGCCCCCATCTGGTCCTTCACAACAACAGTATGGTGTACTTGTTGCCAGGCCACCTATGCTACCCGGCTCAGTAGTCCAGGGTCCCTATGGGCCTATGGTAGTGTCCCCTGCCATGGTCCCCTTTTCAGGCTGGAGTCATTATCAGCAGGCTCCTGCCACAAACCCTGTACTTCCATCTAGCAATACGTCTAATGTTGGTTCAACACAGCTTTATGGGATAACCCAGCTACCTTCATCGGCAGCTACTTATACTGGACCTTATCAACCTTCTGGTTCCTCAATTGGTCCTTCGGGTGCTAGTCAGAAGGAGCATCCATTTCCAGAAAGGCCTGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAGTGTAAATTTGGTCCATTATGTAGATATCATCATCCGGCAGACAAGAGTGCACCAAAAACAAATGTAACCCTTAGTCCCGTGGGTCTTCCTTTGCGTCCGGGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTCGATCATCCTATGGGATCACTGAGTTATAGTCCATCTGCCTCTTCCCTAGCTGATATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCCGTCATCTTCGTCATCAGAGTTGCGGCCTGAACCTGGTGCAGGTTCCAACAAGGAGTCTGTTTCATCCAGAATGTCTTCAATGAGCACATCGACTGGATCAGTTGGCTTGACTTTGTCAAGTGTTGGACCCATTTCTCACTCAAGCACCCAACCTTCTGCTCAGAGTTCCAGTTCTCTGGAAACTACCAGTGCTACCACAAGTAGCACTGTCTGTCACACCTCAAGTTAA 1338 0.5179 MERYGRASEGSQSDPSPEWTVAAGADAGLEESSWQLGLPGAESYPLRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAARTGGEFPERVGQPVCQGEKECSYYVKTGQCKFGATCKFHHPQPAGVQVLAPTPVPPVSPMSVPVPSPMYPTVQPPSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFSGWSHYQQAPATNPVLPSSNTSNVGSTQLYGITQLPSSAATYTGPYQPSGSSIGPSGASQKEHPFPERPDQPECHYYMKTGECKFGPLCRYHHPADKSAPKTNVTLSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPEPGAGSNKESVSSRMSSMSTSTGSVGLTLSSVGPISHSSTQPSAQSSSSLETTSATTSSTVCHTSS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2399 445 SUPERFAMILY CCCH zinc finger 316 342 IPR036855 GO:0046872
Aed6g2399 445 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 100 - -
Aed6g2399 445 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Aed6g2399 445 MobiDBLite consensus disorder prediction 239 256 - -
Aed6g2399 445 MobiDBLite consensus disorder prediction 1 20 - -
Aed6g2399 445 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872
Aed6g2399 445 MobiDBLite consensus disorder prediction 367 445 - -
Aed6g2399 445 Gene3D - 266 343 - -
Aed6g2399 445 SUPERFAMILY CCCH zinc finger 102 127 IPR036855 GO:0046872
Aed6g2399 445 PANTHER PROTEIN PHOSPHATASE RELATED 1 100 - -
Aed6g2399 445 ProSiteProfiles Zinc finger C3H1-type profile. 100 127 IPR000571 GO:0046872
Aed6g2399 445 PANTHER PROTEIN PHOSPHATASE RELATED 100 435 - -
Aed6g2399 445 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 100 435 - -
Aed6g2399 445 MobiDBLite consensus disorder prediction 239 270 - -
Aed6g2399 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 339 IPR000571 GO:0046872
Aed6g2399 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Aed6g2399 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 292 IPR000571 GO:0046872
Aed6g2399 445 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Aed6g2399 445 Gene3D - 47 133 - -
Aed6g2399 445 SUPERFAMILY CCCH zinc finger 269 295 IPR036855 GO:0046872
Aed6g2399 445 ProSiteProfiles Zinc finger C3H1-type profile. 312 340 IPR000571 GO:0046872
Aed6g2399 445 SUPERFAMILY CCCH zinc finger 50 76 IPR036855 GO:0046872
Aed6g2399 445 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Aed6g2399 445 SMART c3hfinal6 266 293 IPR000571 GO:0046872
Aed6g2399 445 SMART c3hfinal6 101 126 IPR000571 GO:0046872
Aed6g2399 445 SMART c3hfinal6 312 339 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2399 Aed-Chr6 25641215 25646514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2399 1 401 C2H2 Transcription Factor Family AT5G18550 49.892 2.36e-122 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed6g2399 zf-CCCH 1.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2399 - - gmx:100789405 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2399 6 25641215 25646514 Aed6g2399 6 25641215 25646514 ECH
Aed6g2399 6 25641215 25646514 Aed9g0350 9 2405099 2410369 PCT