Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2394 ATGGTGGATAACGTTGGGGGCAGTAGTTCCTCTAATGCTGCAGCTGGCATTATTATCAGGGAGCAGGATCGGTTGCTGCCAATAGCGAATGTTGGGAGGATCATGAAACAGATTCTACCTCCGAACGCGAAAATCTCAAAGGAATCGAAGGAAACAATGCAAGAGTGCGTGTCAGAGTTCATAAGCTTCGTAACCAGCGAGGCGTCAGAGAAGTGCAGGAAGGAAAGGAGGAAGACCGTGAACGGGGATGACATCTGCTGGGCCTTGGGTTCTCTTGGTTTTGACGACTATGCAGACCCATTGAGAAGGTATTTGCAAAGATATAGAGAATTAGAAGTTGATCATAGACCTGGAAATAATAGCCCCCCAAATGAGAATTAG 381 0.4672 MVDNVGGSSSSNAAAGIIIREQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYADPLRRYLQRYRELEVDHRPGNNSPPNEN 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2394 126 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Aed6g2394 126 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Aed6g2394 126 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Aed6g2394 126 SUPERFAMILY Histone-fold 22 124 IPR009072 GO:0046982
Aed6g2394 126 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 118 - -
Aed6g2394 126 ProSitePatterns NF-YB/HAP3 subunit signature. 56 72 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aed6g2394 126 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 118 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aed6g2394 126 Gene3D Histone, subunit A 18 126 IPR009072 GO:0046982
Aed6g2394 126 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 25 89 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2394 Aed-Chr6 25569466 25569846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2394 17 112 CCAAT-HAP3 Transcription Factor Family AT2G47810 78.125 8.20e-56 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aed6g2394 CBFD_NFYB_HMF 3.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2394 K08065 - gmx:100786046 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2394 6 25569466 25569846 Aed6g2394 6 25569466 25569846 ECH
Aed6g2394 6 25569466 25569846 Aed4g0732 4 6089708 6090181 PCT