Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2393 ATGATTCTCCGTCCAACGCCTCTTCTTCTCTACCTCACCCCCAGATCCAAATGGCACTTCTTCTCAACAACAACAACCACTTCAGATCCTCATTCCTTCACCATATCCTACCTCATCGAAACCTGTGGCTTCTCGCGCGAAGCCGCACTTAAAGCATCGACGCGACTCCGTTTCAACACCGCCCAGAAGCCCGATTCCGTTATCTCCTTCTTCAAAACCCACGGCTTCTCCACTACCCAGATCCACCGCGTCTTCAGCCAAGTCCCCGAAGTCATCGTATGCGACCCCATCCAAAGGCTTATCCCCAAATTCCAATTTTTAGCCTCCAAAGGCGCTTCTCCAGACGACACCCTTTTCATCGTCACCAAGAGCCCCCGTTTCCTCCGTTACAGCCTCAACAACCACATCGTACCCACCTACGACTTGCTCCGAACATTTTGTCCCTCTGATCACAAAGCCCTCGCTGTTCTAACCGCCTGTCCCAATTTCATTGCCGACTCTCGCGTTTCATCCAACATTAACATGCTGCTTGATTCCGGTGTTACCCACTCCGGCATTCGCCATTTGCTTTGCAGCAGGCCTTCCATACTCTGCTCCGTCTTGAAAAGTGTCGTGGAGGAAGTGAAGCAGTTGGGGTTTGACCCTTCCAAAGTAAATTTCGCTGTGGCGTTACTGGCCAAAAGGGCTGTTTCTAAATCCCTATGGGATGCCAAAGTTGACGTCTTTAAGAGATGGGGTTGGTCTGAAGATCAAGTTCTCGTTGCTTTTAAGAATCAGCCCAGTATCATGTTGCGCTCTACGGAGAAACTCAATGCAGTGATGGATTTTTGGGTCGGTAGGCTTGGTTGGGATTATTCGGTGCTTATTGCGTCCCCAACGTTGTTTGCCTACAGTTTGGAGAATAGGGTTGTTCCAAGGGCTTTGGTTGTCCAGCATCTTCTCTCCAAAGGCATGATCAAGAAGGGTGCTAGCTTGGTTACACCGTTTTCTATGTCTAATGAGGTGTTCCTGGAAAAGTATGTGAGATTTTTCAAGGAGGAAACATCCACGCTTCTAGAGCTATATCAGGGACATGGAACTTGCTAG 1086 0.4917 MILRPTPLLLYLTPRSKWHFFSTTTTTSDPHSFTISYLIETCGFSREAALKASTRLRFNTAQKPDSVISFFKTHGFSTTQIHRVFSQVPEVIVCDPIQRLIPKFQFLASKGASPDDTLFIVTKSPRFLRYSLNNHIVPTYDLLRTFCPSDHKALAVLTACPNFIADSRVSSNINMLLDSGVTHSGIRHLLCSRPSILCSVLKSVVEEVKQLGFDPSKVNFAVALLAKRAVSKSLWDAKVDVFKRWGWSEDQVLVAFKNQPSIMLRSTEKLNAVMDFWVGRLGWDYSVLIASPTLFAYSLENRVVPRALVVQHLLSKGMIKKGASLVTPFSMSNEVFLEKYVRFFKEETSTLLELYQGHGTC 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2393 361 Pfam mTERF 68 218 IPR003690 GO:0003690|GO:0006355
Aed6g2393 361 Pfam mTERF 235 337 IPR003690 GO:0003690|GO:0006355
Aed6g2393 361 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 25 358 - -
Aed6g2393 361 PANTHER CGI-12 PROTEIN-RELATED 25 358 IPR003690 GO:0003690|GO:0006355
Aed6g2393 361 SMART mt_12 285 319 IPR003690 GO:0003690|GO:0006355
Aed6g2393 361 SMART mt_12 187 214 IPR003690 GO:0003690|GO:0006355
Aed6g2393 361 SMART mt_12 118 150 IPR003690 GO:0003690|GO:0006355
Aed6g2393 361 SMART mt_12 82 113 IPR003690 GO:0003690|GO:0006355
Aed6g2393 361 SMART mt_12 253 284 IPR003690 GO:0003690|GO:0006355
Aed6g2393 361 SMART mt_12 154 182 IPR003690 GO:0003690|GO:0006355
Aed6g2393 361 Gene3D Transcription termination factor 3, mitochondrial 165 352 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2393 Aed-Chr6 25562862 25563947 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aed6g2393 mTERF 9.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2393 K15032 - gmx:102666739 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2393 6 25562862 25563947 Aed4g0729 4 6078304 6079491 PCT