Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2363 ATGGCAATCTACGATGGCAATGAAATCGAATCGAAAGACTATGCCTTCAGCGGCAAGATAATGCTAATCGCCATTGTGATTCTCTTCATCATTATCATTATAATGCTTTGCCTCCACGTCTACGTCCGGCGGAGCCTCGTAAACACTCGCCGGCGGCAACAGCTCCGCCGCAGTAACCGGCCGCAGTTCGTGTTCTACATGGACCCCGCCGCTCGCATTGCCCGAACCGGGCGGGGGCTCCACCCCTCCGTGATCTCCACGCTCCCGGTGTTCACCTTCTCCGCCGCCATGAGGCAGGCAATAGAATGCGCAGTTTGTTTATCGGAGTTCGAGAACGAGGAAACGGGTCGGGTATTGCCAAAATGCAATCACAGTTTCCATACTGAGTGCATCGACATGTGGTTTCAGTCTCATGCCACGTGTCCCCTATGCAGGGAACCCGTGGAGGCTATGCCCGCGCGAGAAACCCGAACCGATGTGTCTGTTATAGTGTGCGAGCCCGAACCGGTGGCTTCTTCTTCCACTTCGTTTCGTAACGAGGAGAGCTTAGGGAGTGCGACGGAGTCGTCGTTTCGTTCGCCGGTGAGTCGTATATTGTCGTTTAAGAGAATTCTGAGTAGAGAGAAGAAAGGAAGCATTGTGGGAAGGTGCAGCTCCATGACCGAGTTAGACGTAGAACAACAACGAGAAGACTCATGTGACTCGGTGCCCATGGGTTGA 720 0.5375 MAIYDGNEIESKDYAFSGKIMLIAIVILFIIIIIMLCLHVYVRRSLVNTRRRQQLRRSNRPQFVFYMDPAARIARTGRGLHPSVISTLPVFTFSAAMRQAIECAVCLSEFENEETGRVLPKCNHSFHTECIDMWFQSHATCPLCREPVEAMPARETRTDVSVIVCEPEPVASSSTSFRNEESLGSATESSFRSPVSRILSFKRILSREKKGSIVGRCSSMTELDVEQQREDSCDSVPMG 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2363 239 SUPERFAMILY RING/U-box 95 151 - -
Aed6g2363 239 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Aed6g2363 239 MobiDBLite consensus disorder prediction 220 239 - -
Aed6g2363 239 SMART ring_2 103 144 IPR001841 -
Aed6g2363 239 PANTHER RING-H2 FINGER PROTEIN ATL64 11 202 - -
Aed6g2363 239 CDD RING-H2_EL5_like 102 145 - -
Aed6g2363 239 Pfam Ring finger domain 102 145 IPR001841 -
Aed6g2363 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 151 IPR013083 -
Aed6g2363 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 11 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2363 Aed-Chr6 25380668 25381387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2363 5 232 Rapid Response to Elicitors AT3G16720 41.869 2.86e-53 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2363 - - gmx:100800859 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2363 6 25380668 25381387 Aed6g2363 6 25380668 25381387 ECH
Aed6g2363 6 25380668 25381387 Aed4g0692 4 5825086 5825940 PCT