Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2345 ATGAATCTCAGCAACGGAAAGGGATCCATGTCAACGCTTTCTACAAGCGTGGTTATGAAATCCGGCGACGCCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTTTTGGTGGTGGACGATGATCCCACGTGCCTCATGATTCTTGAGAAGATGCTCCGCACGTGCCTCTACGAAGTTACCAAATGCAATCGAGCAGAAGCTGCTCTCTCACTGCTCAGAGAGAACAAAAATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCGGACATGGATGGATTTAAACTTTTGGAGCACATTGGGTTGGAGATGGACCTTCCTGTTATTAACACTGAGCAATCAGGCAGTGCTGAGGAAGGAGATCGGCAACCAAAGGCATCTGATGAAGCAGATTACTCTTCCTCAGCGAATGAAGGAAGTTGGAGAAATGCAAAGAAGAGAAGGGATGAGGAAGAGGAGGCAGAGGACAGAGATGACTCATCCACGTTAAAGAAGCCACGGGTTGTTTGGTCCGTGGAGCTCCATCAACAGTTTGTGGCTGCTGTGGATCAACTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGATTGTATCTTCGAAGGTTGAGTGGAGTTTCTCAGCACCAGAATAACTTGAACAACTCCTTTCTTGGCCCCCAAGATGCAACATTTGGGACAATTTCTTCAATTAGTGGGATTGATCTTCAAACTCTTGCAGTTGCTGGCCAGCTCCCAGCACAAAGTCTAGCCACACTTCAAGCAGCAGGACTTGGTAGGTCGACTGCAAAAGCTGGTGTATCTATGCCTCTCATGGATCAAAGAAATGTTTTCAGTTTTGAAAACCCGAGGTTAAGATTTGGAGAAGGCCAGCAGCAACATTTAAGCAGTAGTAAACCAATGAACTTGTTGCATGGAATCCCTACGAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCACCAGTCTACCCAATCCATTGGCAGCTTGAATATGCGAGTCAATGCTTCCGCTACACAAGGAAACCCCTTAATGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAATACTGGTCCTCGGGTTCCAAGACTTCCATCATCTTTGGGGCAGCCTACTGTATCGAATGGAATTTCTAATGGTCTTCTGGGCCGAAATGGGATTGCTAATAATAACAGAGGATCTGCATATAATCCTGTTCCACCAAACTCTTCGTTGTTGAGTTTTCCAATGAATCAAACCTCTGAAATGTCTGTCAACAATAGTTTCCCTCTTGGAAGTACTCCGGGTATATCCAGTATCACAACAAAAGGCTCATTTCAAGAGGAAGTTACATCAGGAAATAAAGGATCTGGTGGATTTCCAAGTTATGATATTTTTAATGAACTGCACCATCAGAAGACCCATGATTGGGAGATAACAAACCCAGGCTTGACATACAATGCCTCCCAGCATGCAAATCCTTTACAGGGTAACATTGATGTCGCACCATCAGTTTTAGTGCATCAAGGGTTTTCTTCTACACAACAGACTGGCCAAAGCAGAGATGCCGCTTTGATTGGAAAAGCTATGTTCTCCATGGGAGAATGCTTGGGACAGGATAACCTTCAAAATGCTGGTCAAAACCTCAATCCACTTCTTGTTGACAATTCAATAAGGGTCAAGGCTGAAAGAATTCCTGATGTGATCTCCCAGACTAATCTCTTCCCTGATCATTATGGGCAAGAGGATCTGATGAGTGCACTTCTAAAACAGCAAGAAGGCGTGGGACCAGCTGAGAATGAGTTTGAATTTGATGGATATTCTCTGGACAACATTCCTGTCTAG 1899 0.4513 MNLSNGKGSMSTLSTSVVMKSGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEAALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVINTEQSGSAEEGDRQPKASDEADYSSSANEGSWRNAKKRRDEEEEAEDRDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFLGPQDATFGTISSISGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVSMPLMDQRNVFSFENPRLRFGEGQQQHLSSSKPMNLLHGIPTNMEPKQLANLHHQSTQSIGSLNMRVNASATQGNPLMMQMAQSQPRGQMLSENTGPRVPRLPSSLGQPTVSNGISNGLLGRNGIANNNRGSAYNPVPPNSSLLSFPMNQTSEMSVNNSFPLGSTPGISSITTKGSFQEEVTSGNKGSGGFPSYDIFNELHHQKTHDWEITNPGLTYNASQHANPLQGNIDVAPSVLVHQGFSSTQQTGQSRDAALIGKAMFSMGECLGQDNLQNAGQNLNPLLVDNSIRVKAERIPDVISQTNLFPDHYGQEDLMSALLKQQEGVGPAENEFEFDGYSLDNIPV 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2345 632 Pfam Response regulator receiver domain 35 109 IPR001789 GO:0000160
Aed6g2345 632 ProSiteProfiles Response regulatory domain profile. 34 150 IPR001789 GO:0000160
Aed6g2345 632 Pfam Myb-like DNA-binding domain 167 217 IPR001005 -
Aed6g2345 632 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 221 IPR017930 -
Aed6g2345 632 CDD REC_typeB_ARR-like 35 109 - -
Aed6g2345 632 PANTHER TWO-COMPONENT RESPONSE REGULATOR 111 603 IPR045279 GO:0009736
Aed6g2345 632 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 110 IPR045279 GO:0009736
Aed6g2345 632 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 110 - -
Aed6g2345 632 MobiDBLite consensus disorder prediction 113 162 - -
Aed6g2345 632 SMART REC_2 33 202 IPR001789 GO:0000160
Aed6g2345 632 PANTHER TWO-COMPONENT RESPONSE REGULATOR 111 603 - -
Aed6g2345 632 Gene3D - 162 224 - -
Aed6g2345 632 SUPERFAMILY CheY-like 32 109 IPR011006 -
Aed6g2345 632 MobiDBLite consensus disorder prediction 141 162 - -
Aed6g2345 632 PIRSF RR_ARR_type-B 11 110 IPR017053 GO:0003677|GO:0003700|GO:0009736
Aed6g2345 632 PIRSF RR_ARR_type-B 109 624 IPR017053 GO:0003677|GO:0003700|GO:0009736
Aed6g2345 632 SUPERFAMILY Homeodomain-like 162 222 IPR009057 -
Aed6g2345 632 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 165 218 IPR006447 GO:0003677
Aed6g2345 632 Gene3D - 17 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2345 Aed-Chr6 25290829 25295263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2345 68 632 Response Regulator Gene Family AT3G16857 44.462 5.32e-142 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aed6g2345 Response_reg 6.2e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2345 - K14491 gmx:100814930 1131.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2345 6 25290829 25295263 Aed6g2345 6 25290829 25295263 ECH
Aed6g2345 6 25290829 25295263 Aed4g0663 4 5600883 5605033 PCT