Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2342 ATGGGGAGGGAAGGGGCATTTGGAAATCAAATCAGCTTCTCGGAATCGAATCGGATATCTCAGATCTCGGAGATCAGAATGGTGGATCCAACTGGAAAAGGATCGGAAGTTGAGGACTCAAACCCTAACGCTCCTTCCTCAGGGAACAGTCCGAGCAGCAACAATGAGCAGAAGAAAACCTGCGCCGATTGCGGCACCACCAAGACCCCTCTCTGGAGGGGTGGCCCTGCAGGACCTAAGTCTCTGTGCAACGCGTGCGGGATCAGAAGCAGGAAGAAGAAGAGAGCGATATTGGGAATAAGCAAGGGGAGCAACGAGGACGGGAGAAAAGGAAAGAGGACCGGCGGCGGCGGCGGCGGCGGTGGCGCGTTGGGTAGGGAAGCGTTGTTGCATCGATCGCATTGGAAGAAGCTAGGAGAGGAAGAAAAAGCTGCGGTGTTGTTGATGTCGCTATCTTATGGATCCGTTTATGCCTGA 477 0.543 MGREGAFGNQISFSESNRISQISEIRMVDPTGKGSEVEDSNPNAPSSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGSNEDGRKGKRTGGGGGGGGALGREALLHRSHWKKLGEEEKAAVLLMSLSYGSVYA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2342 158 PANTHER OS01G0976800 PROTEIN 27 111 - -
Aed6g2342 158 PANTHER OS01G0976800 PROTEIN 124 158 - -
Aed6g2342 158 MobiDBLite consensus disorder prediction 1 84 - -
Aed6g2342 158 Gene3D - 55 115 IPR013088 GO:0006355|GO:0008270
Aed6g2342 158 ProSitePatterns GATA-type zinc finger domain. 61 86 IPR000679 GO:0006355|GO:0043565
Aed6g2342 158 ProSiteProfiles GATA-type zinc finger domain profile. 55 91 IPR000679 GO:0006355|GO:0043565
Aed6g2342 158 MobiDBLite consensus disorder prediction 36 64 - -
Aed6g2342 158 MobiDBLite consensus disorder prediction 9 24 - -
Aed6g2342 158 Pfam GATA zinc finger 61 95 IPR000679 GO:0006355|GO:0043565
Aed6g2342 158 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 55 95 - -
Aed6g2342 158 SMART GATA_3 55 109 IPR000679 GO:0006355|GO:0043565
Aed6g2342 158 MobiDBLite consensus disorder prediction 97 125 - -
Aed6g2342 158 CDD ZnF_GATA 60 95 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2342 Aed-Chr6 25266052 25267655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2342 52 158 C2C2-Gata Transcription Factor Family AT5G49300 55.932 1.11e-36 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed6g2342 GATA 7.6e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2342 - - pvu:PHAVU_003G110400g 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2342 6 25266052 25267655 Aed6g2342 6 25266052 25267655 ECH