Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2341 ATGTCGCTCAGGCCAAATGCCAGAACTGAGGTTCGCCGCAACCGTTACAAGGTCGCCGTCGATGCCGACGAGGGCCGCCGGAGAAGAGAGGACAACATGGTTGAGATCCGCAAGAGCAAGCGCGAAGAGAGTTTGCTGAAGAAGCGTCGCGAAGGCCTCCAATCTCAGCAACAGTTTCCTGCTCCTCTTCAGAACTCCACTGTCGACAAGAAGTTAGAAAGTCTTCCTGCCATGGTGGCTGGAGTTTGGTCGGATGATAATACTCTTCAACTTGAAGCCACCACGCAATTCCGCAAGCTACTTTCAATTGAACGGAGCCCTCCGATTGAGGAAGTTATTCAAGCAGGTGTTGTTCCACGTTTTGTTGAGTTTCTTGTTAGGGAGGATTTCCCTCAACTTCAGTTTGAAGCTGCGTGGGCTCTCACAAACATTGCATCTGGGACTTCTGAGAACACTAAGGTGGTAATTGATCATGGGGCAGTTCCTATATTTGTGAAGCTACTTAGTTCACCCAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCTTTAGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGATCTAGTGCTCAGCCATGGTGCCCTCATTCCACTGTTGGCTCAGTTGAATGAGCATGCAAAACTTTCAATGCTGAGAAATGCCACATGGACATTATCTAACTTTTGTAGGGGTAAGCCGCAGCCTCCATTTGAGCAGGTGAAACCAGCACTCCCTGCACTCGAGCGTTTGGTTTTTTCCAACGATGAAGAAGTTTTAACAGATGCCTGCTGGGCATTATCATATCTCTCTGATGGCACAAATGACAAAATCCAAGCAGTTATTGATGCAGGTGTATGTACCAGATTGGTCCAGCTACTCATGCACCCATCTCCCTCAGTGCTGATTCCTGCTCTTCGTACAGTGGGAAATATTGTGACTGGAGATGACATGCAGACTCAGTGTATTATCAGTCATGGTGCACTCCCGTGCCTTTTGAACCTGATGACACATAATCATAAAAAAAGCATCAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAGGAACAGATACAGACTGTTATTGAAGCTGGTCTGATTGCACCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGAACTCATGACCAGATCAAGTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTTTGTGATCTGCTTGTTTGCCCGGACCCAAGAATTGTTACTGTTTGTTTAGAAGGCCTTGAGAATATTCTGAAGGTTGGAGAAGCTGAGAAGAGCCTAGGTAACAGTGGAGATGGTAACTTGTATGCACAGATGATAGATGATGCTGAGGGATTGGAAAAGATTGAAAGCCTGCAGAGTCATGACAACAATGAAATATATGAAAAGGCTGTTAAAATTCTTGAAACATACTGGTTGGAAGACGATGAAGATGAGACACTACCTTCAGGCGATGCTGAAGATCTTTTCTTGAGAAGAGACTTGTTGGACGAAGTAGGGGTTTATGCTGGGAGTCTGGAGGGTCGGGGTCAGGGTCAGGGTCAGTCATTGCACCTTGTGTGTCTAGTGTCCTTCGTGGTTAATGAGGTGCCATGCCGGGGAGGGTACCAAGTCCAAGTGAGGAGAAGAAGGGACTTGTGTGGATTCAACAGCTGCAGCATAATGACCTTTTCGGCTGTGTTTGTTGTACTAAAAATTATATAA 1773 0.4602 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQSQQQFPAPLQNSTVDKKLESLPAMVAGVWSDDNTLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVKPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCTRLVQLLMHPSPSVLIPALRTVGNIVTGDDMQTQCIISHGALPCLLNLMTHNHKKSIKKEACWTISNITAGNKEQIQTVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNSGDGNLYAQMIDDAEGLEKIESLQSHDNNEIYEKAVKILETYWLEDDEDETLPSGDAEDLFLRRDLLDEVGVYAGSLEGRGQGQGQSLHLVCLVSFVVNEVPCRGGYQVQVRRRRDLCGFNSCSIMTFSAVFVVLKII 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2341 590 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Aed6g2341 590 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Aed6g2341 590 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Aed6g2341 590 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Aed6g2341 590 Pfam Armadillo/beta-catenin-like repeat 317 357 IPR000225 GO:0005515
Aed6g2341 590 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Aed6g2341 590 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Aed6g2341 590 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Aed6g2341 590 Pfam Atypical Arm repeat 457 503 IPR032413 -
Aed6g2341 590 Gene3D - 11 50 IPR036975 GO:0006606
Aed6g2341 590 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Aed6g2341 590 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Aed6g2341 590 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Aed6g2341 590 PANTHER IMPORTIN SUBUNIT ALPHA 2 510 - -
Aed6g2341 590 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Aed6g2341 590 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Aed6g2341 590 PIRSF Importin_alpha 2 513 IPR024931 GO:0005737|GO:0006606|GO:0061608
Aed6g2341 590 PANTHER IMPORTIN ALPHA 2 510 - -
Aed6g2341 590 Gene3D - 73 496 IPR011989 -
Aed6g2341 590 SMART arm_5 274 314 IPR000225 GO:0005515
Aed6g2341 590 SMART arm_5 148 188 IPR000225 GO:0005515
Aed6g2341 590 SMART arm_5 316 357 IPR000225 GO:0005515
Aed6g2341 590 SMART arm_5 359 399 IPR000225 GO:0005515
Aed6g2341 590 SMART arm_5 189 231 IPR000225 GO:0005515
Aed6g2341 590 SMART arm_5 402 442 IPR000225 GO:0005515
Aed6g2341 590 SMART arm_5 233 272 IPR000225 GO:0005515
Aed6g2341 590 SMART arm_5 105 146 IPR000225 GO:0005515
Aed6g2341 590 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Aed6g2341 590 SUPERFAMILY ARM repeat 6 500 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2341 Aed-Chr6 25257950 25262739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2341 131 391 U-box Gene Family AT3G46510 25.670 3.28e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2341 K15042 - gmx:100792804 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2341 6 25257950 25262739 Aed6g2341 6 25257950 25262739 ECH
Aed6g2341 6 25257950 25262739 Aed2g2416 2 27205928 27216943 ECH
Aed6g2341 6 25257950 25262739 Aed4g0659 4 5575102 5581133 PCT