Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed6g2300 | ATGGCATCTGAAAACCCTGCAACGCCCGATCCCGAGTCACCAACCTCTCCTTCCGTTGGCTTCAACACCGACCAGCTTCCTCACACCCACACCAGCCGTGCCTCCGAAGATGACGAGGCTTCCGTCGATCCCGATATCGTTCGAGACGAAATCGAAGAACAACCCGAGGAAGAAGAAGACGGAGAGGATCTTTACAATGACAATTTTCTGGATGATTATAGGAGAATGGACGAGGCTGACCAGTTTGAATCGTTTGGTCTGGACGACTCGCTGGAAGATGAGAGAGATTTTGATCAGATCATGGAGGATCGAAGGGCTGCGGAGGTTGAACTTGAGGCACGCGATGGTCGCGCCTCCAATCGCAACAAGCTTCCCCAGCTTCTCCACGACCAGGATACAGATGATGACAGTCGCAGGCCTTCCAAAAGGGCTCGAGCGGATTTTAGGCCTTCCGCAGCAAGTGATGATGATCTTGATGGTATGCAAAGTTCTCCTGGAAGGTCACAACGTGGGCACTCAAGAGAGGATGTTCCTATGACTGATCAAACTGAGGATGATCGGGATGATGATGATTTTGATGATGGGTACGAGATGTATCATGTTCAAGGAACACTTAGAGAGTGGGTTACGAGAGATGAAGTGCGCCGCTTCATAGCCAGGAAATTCAAGGATTTCTTACTGACGTATGTTAATCCAAAAAATGAACAACGGGACAAGGAATATGTGTGGCTGATAAATGAGATGGTGTCAGCTAGTAAGTGCAGTTTGGAGATAGATTACAAGCAATTTATCTATGTTCATCCCAACATTGCCATTTGGCTAGCTGATGCGCCTCAGTCTGTCTTAGAAGTAATGGAAGATGTTACCAAAAGCGTTGTCTTTGAATTACATCCGAATTACAGAAATATACACCAAAAGATTTATGTACGCATAACCAATTTGCCAGTTTATGATCAGATTCGAAATATAAGGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCTCAGTTGCAGCAGGTGAAGTATGACTGTACCAAATGTGGAGCAATTTTGGGGCCTTTTATTCAGAATTCCTATTCAGAGGTGAAAGTAGGATCCTGTCCCGAGTGTCAATCGAAAGGACCATTCACTGTCAATATTGAACAGACAATTTATAGGAATTTCCAGAAGCTTACCCTCCAAGAGAGCCCAGGAATAGTTCCTGCAGGTCGACTTCCAAGATACAAGGAAGTGATACTATTGAATGATCTGATTGACTGTGCTCGCCCTGGAGAAGAAATTGAGGTCACTGGTGTTTATACCAATAATTTTGACTTATCCCTAAACACAAAAAATGGGTTTCCAGTCTTTGCCACTGTTGTTGAAGCAAATTATGTTACGAAAAAGCAAGACCTTTTCTCTGCCTACAAACTTACGCAGGAAGACATGGAAGAGATTGAAAATTTGGCTAAAGATCCTCGAATTGGAGAAAGGATTGTCAAGTCTATTGCTCCATCAATCTACGGTCACGATGACATAAAAACTGCCATATCTTTAGCTATGTTTGGAGGCCAAGAGAAAAATGTGGAAGGAAAGCATCGCCTGCGGGGAGACATAAATGTTCTTCTCCTCGGTGATCCAGGGACAGCGAAATCTCAGTTTCTTAAGTATGTTGAAAAAACTGGGCAGAGAGCTGTATACACCACTGGGAAAGGGGCTTCTGCAGTGGGTCTCACAGCTGCGGTTCATAAGGATCCAGTCACAAGGGAATGGACTCTTGAAGGAGGAGCACTTGTTCTAGCTGACAAAGGAATTTGTCTTATTGACGAGTTTGACAAGATGAATGACCAGGATAGGGTGAGTATCCATGAAGCCATGGAGCAGCAGAGTATAAGTATATCAAAAGCTGGAATTGTTACATCTCTTCAGGCACGCTGTTCTGTTGTTGCTGCAGCAAATCCTGTTGGAGGAAGATATGATTCCTCTAAAACATTTTCTCAAAATGTTGAATTGACAGATCCTATTATTTCCCGTTTTGACATCCTCTGTGTTGTGAAGGATGTTGTTGATCCGGTCATTGATGAAATGCTTGCAACATTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCTAAGCAAGATGACAAGTCCGTTAGTGAGTCCCAAGATGTTCATGCATCTGGCATGCCCTCTGATCCAGAGATACTTCCTCAACGGCTACTGAAGAAGTACATTACATATGCCAAGTTAAATATTTTTCCAAGGTTACAAGATGCTGATATGGATAAACTGTCACATGTCTATGCCGAACTGCGGAGGGAATCTTCACACGGGCAAGGAGTCCCTATTGCTGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCGAGAATGCATCTCAGGCAACATGTTACACAAGAGGATGTAGACATGGCAATTCGTGTTCTACTTGAATCATTCATTTCAACTCAAAAATTTGGGGTGCAGAAGGCTCTTCAAAAGAGCTTTAGGAAGTATATGACTTTTAAGAAGGACTATAATGAAATGCTCCTTTTCATTCTCCGGGAGCTTGTAAAGAATGCTTTGCATTTTGAAGAAATTGTCACCGGATCTGCTTCTGGTTTAACACACATAGATATCAAAGTAGATGATCTCTACAACAAGGCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCACTTTTCAAGGGCCAATTTTGTAATGGATGAAGAACGGAAAGTGATCAGACATCACCTTACAAGATGA | 2808 | 0.433 | MASENPATPDPESPTSPSVGFNTDQLPHTHTSRASEDDEASVDPDIVRDEIEEQPEEEEDGEDLYNDNFLDDYRRMDEADQFESFGLDDSLEDERDFDQIMEDRRAAEVELEARDGRASNRNKLPQLLHDQDTDDDSRRPSKRARADFRPSAASDDDLDGMQSSPGRSQRGHSREDVPMTDQTEDDRDDDDFDDGYEMYHVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEQRDKEYVWLINEMVSASKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVTKSVVFELHPNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCTKCGAILGPFIQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDMEEIENLAKDPRIGERIVKSIAPSIYGHDDIKTAISLAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVVAAANPVGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVIDEMLATFVVDSHFKSQPKGAKQDDKSVSESQDVHASGMPSDPEILPQRLLKKYITYAKLNIFPRLQDADMDKLSHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKKDYNEMLLFILRELVKNALHFEEIVTGSASGLTHIDIKVDDLYNKAQEHDIYDLKPFFNSSHFSRANFVMDEERKVIRHHLTR | 935 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed6g2300 | 935 | MobiDBLite | consensus disorder prediction | 1 | 195 | - | - | |
| Aed6g2300 | 935 | Pfam | MCM N-terminal domain | 220 | 313 | IPR027925 | - | |
| Aed6g2300 | 935 | Gene3D | - | 347 | 397 | - | - | |
| Aed6g2300 | 935 | Gene3D | - | 212 | 316 | - | - | |
| Aed6g2300 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 352 | 364 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aed6g2300 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 329 | 346 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aed6g2300 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 463 | 474 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aed6g2300 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 448 | 459 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aed6g2300 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 387 | 401 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aed6g2300 | 935 | MobiDBLite | consensus disorder prediction | 97 | 119 | - | - | |
| Aed6g2300 | 935 | MobiDBLite | consensus disorder prediction | 713 | 727 | - | - | |
| Aed6g2300 | 935 | PANTHER | DNA HELICASE | 138 | 924 | - | - | |
| Aed6g2300 | 935 | MobiDBLite | consensus disorder prediction | 42 | 66 | - | - | |
| Aed6g2300 | 935 | ProSitePatterns | MCM family signature. | 608 | 616 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Aed6g2300 | 935 | SMART | mcm | 316 | 830 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed6g2300 | 935 | Pfam | MCM P-loop domain | 486 | 709 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed6g2300 | 935 | Pfam | Mini-chromosome maintenance protein 2 | 37 | 184 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Aed6g2300 | 935 | SUPERFAMILY | Nucleic acid-binding proteins | 221 | 468 | IPR012340 | - | |
| Aed6g2300 | 935 | Gene3D | - | 320 | 445 | IPR012340 | - | |
| Aed6g2300 | 935 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 138 | 924 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed6g2300 | 935 | ProSiteProfiles | MCM family domain profile. | 499 | 705 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed6g2300 | 935 | Pfam | MCM AAA-lid domain | 746 | 829 | IPR041562 | - | |
| Aed6g2300 | 935 | Pfam | MCM OB domain | 319 | 446 | IPR033762 | - | |
| Aed6g2300 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 540 | 555 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed6g2300 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 600 | 614 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed6g2300 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 652 | 664 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed6g2300 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 679 | 687 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed6g2300 | 935 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 628 | 641 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed6g2300 | 935 | MobiDBLite | consensus disorder prediction | 127 | 154 | - | - | |
| Aed6g2300 | 935 | CDD | MCM2 | 502 | 828 | - | - | |
| Aed6g2300 | 935 | Gene3D | - | 479 | 852 | IPR027417 | - | |
| Aed6g2300 | 935 | MobiDBLite | consensus disorder prediction | 712 | 739 | - | - | |
| Aed6g2300 | 935 | MobiDBLite | consensus disorder prediction | 67 | 82 | - | - | |
| Aed6g2300 | 935 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 509 | 832 | IPR027417 | - | |
| Aed6g2300 | 935 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed6g2300 | Aed-Chr6 | 25032450 | 25037599 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed6g2300 | 1 | 930 | Core DNA Replication Machinery Family | AT1G44900 | 73.959 | 0.0 | 1364 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed6g2300 | K02540 | - | gmx:100799441 | 1768.82 |