Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2295 ATGAGTCACCACAACACGCGCCGGAGCCCCGGGGGATTCCGCTCCGCCCCTGGCCCTGCACCTCACCACCGCTCATTCGACAGTCCCCCGCGTCGCTCTCCCGGCAGAGGCGGAGGATTCCGGCCGATAGGCGCCGAGGCTCCCGGGGAATTCGGATTCAACGGCAACCAGGCGCCGCAGCTCGCTGGCCAGAAACGGGGCTTTCCTTTCTCCGGACGCGGTGGTGGTTCGCCCGATCGTTTAGATGGTGGAAATTTTGCCAAACTTTTTGTCGGATCTGTTCCCCGAACAGCCACTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAGGTTGCCCTCATCAAAGATAAAAAGACAGGACAGCATCAAGGGGTTTGGGAGATCAACAGTGATGATCTGTATATATTTTTATTTCAAAGTCATGACAGGTTGGATTCACAGTTATGCTTCATCACAAGAATTTATTCCAAGCTTGTACAATATCCAGTGGCAGGAGAAAAGCAGTCTGGTTGTTGTTTCATAAAATATGCTACCCCGGAAGAAGCTGATCAGGCAATCAGAGCATTGCACAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTTGGTGCCGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTCGTTAAATACTCACACAGAGATATGGCTCTGGCAGCAATTAATGCACTTAATGGAATCTACACAATGAGAGGTTGTGAGCAGCCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGTCAAGGAGATTCCAGGGGTCTTCCATTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCACAAGACATCCATCCAATATTACAGATCCTATGGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCCATGCATCCGCCGAATATGGGGCCATCTTCTAATGCTGGTCTTCATGGCATGGGGCCACCGTTGCTTCCAAGATCTGGAGACATGGCATTGCCTACAAATTCAGGCGGTCCTATGACTAGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCGATGTCACAACAGAATTTCAATCAGCCCATGCCACAAATTCCACCAGTCAATCAACAAATATCACCATTGCAGAAACCTATTCAGTCATCCCAGGAACTGCCACCTTCCCACCAGTTATACCCTCAAGCACCAGTTCCCTATCCACAAACATCTCTTAGGCAGCATGGCCAGCCACAACTTCCTCTCTCTGCTGGTCCTCTTCCATCTCAGCAGATGCATGGATTAACTGGACAGTTTCCAACTTCCCAGCCCCAAACTCAACAGAGTGCTTTGTCTGCTGCAATTCCTACCAGCATGCAATCTAATACTGCATTAACTACTACAAATCAACAGCAAGTACAGCAGCAGCCACTTCAGCAATCCCCTTCTCCATTAGCTCAGATGTTGTCACAACAAACACAGACGTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATTCAACCTTCTAGTCAAGCATTAACATTGCAGCAAAATTCAGAAGCTACCAGAAAGCAGTCTCAATGGGCTGGGCCTGGGACTGCACTTGCTGCAGATCTCCCTTCATCCACACCTGCTAATTCTGCCTTACCAGCAATAAACCAGAACATGGCTCTTGCCAAATGTAATTGGACAGAACATTTATCTCCCGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCCGAGGAGTTGACACTATATGAAAAGCCACAGCAAAGACCATCTGTTCAGCAGTCTCAAATTCAGTCACAACCTTCAATACTACCTGCCCAGCAAGTTCCACAAATCCAACAGGTTCAGCCTCAAAGTCATTTCCAAGGACAAGTTCTCCACCAGCAACAAATACAGCAGCCTTCTTTGTCTTCTTCGTTCCAGGCATATGGAGTTGCAGGCCCTCAAAATGTTCAGGAGTTTGAGCTTGAGGCAGCTTTTAAATGGCTGTGA 2202 0.4805 MSHHNTRRSPGGFRSAPGPAPHHRSFDSPPRRSPGRGGGFRPIGAEAPGEFGFNGNQAPQLAGQKRGFPFSGRGGGSPDRLDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGVWEINSDDLYIFLFQSHDRLDSQLCFITRIYSKLVQYPVAGEKQSGCCFIKYATPEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGLPFGGPGFGPRFDAPGTRHPSNITDPMGDRMPPPNAWRPMHPPNMGPSSNAGLHGMGPPLLPRSGDMALPTNSGGPMTSLGGPIDGRFQVQSMPMSQQNFNQPMPQIPPVNQQISPLQKPIQSSQELPPSHQLYPQAPVPYPQTSLRQHGQPQLPLSAGPLPSQQMHGLTGQFPTSQPQTQQSALSAAIPTSMQSNTALTTTNQQQVQQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQALTLQQNSEATRKQSQWAGPGTALAADLPSSTPANSALPAINQNMALAKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTLYEKPQQRPSVQQSQIQSQPSILPAQQVPQIQQVQPQSHFQGQVLHQQQIQQPSLSSSFQAYGVAGPQNVQEFELEAAFKWL 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2295 733 MobiDBLite consensus disorder prediction 304 371 - -
Aed6g2295 733 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 293 IPR000504 GO:0003723
Aed6g2295 733 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 129 IPR000504 GO:0003723
Aed6g2295 733 ProSitePatterns WW/rsp5/WWP domain signature. 622 647 IPR001202 GO:0005515
Aed6g2295 733 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 304 IPR000504 GO:0003723
Aed6g2295 733 SUPERFAMILY RNA-binding domain, RBD 224 327 IPR035979 GO:0003676
Aed6g2295 733 SUPERFAMILY WW domain 621 653 IPR036020 GO:0005515
Aed6g2295 733 Pfam WW domain 621 647 IPR001202 GO:0005515
Aed6g2295 733 Gene3D - 617 663 - -
Aed6g2295 733 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 54 715 - -
Aed6g2295 733 Gene3D - 221 312 IPR012677 -
Aed6g2295 733 SMART ww_5 617 649 IPR001202 GO:0005515
Aed6g2295 733 MobiDBLite consensus disorder prediction 1 56 - -
Aed6g2295 733 ProSiteProfiles WW/rsp5/WWP domain profile. 622 649 IPR001202 GO:0005515
Aed6g2295 733 PANTHER TRANSFORMER-2-RELATED 54 715 - -
Aed6g2295 733 MobiDBLite consensus disorder prediction 410 533 - -
Aed6g2295 733 Gene3D - 82 220 IPR012677 -
Aed6g2295 733 SUPERFAMILY RNA-binding domain, RBD 80 217 IPR035979 GO:0003676
Aed6g2295 733 SMART rrm1_1 88 210 IPR000504 GO:0003723
Aed6g2295 733 SMART rrm1_1 225 300 IPR000504 GO:0003723
Aed6g2295 733 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 214 IPR000504 GO:0003723
Aed6g2295 733 CDD RRM2_FCA 225 304 IPR034645 -
Aed6g2295 733 CDD WW 619 649 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2295 Aed-Chr6 24987091 24997251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2295 77 381 Eukaryotic Initiation Factors Gene Family AT2G36660 22.678 6.40e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2295 6 24987091 24997251 Aed6g2295 6 24987091 24997251 ECH