Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2255 ATGATGGCTGACACTGCAAAATACATTGCCAACTCACAATTAGACCTTGAAGAGATATTGCAAGAAGCAGAAAATCGTTGGCTTCGACCTGCTGAAATATCACTTCGTTTCTTTCGCAAGGATGGTCACCGCTGGAAGAAGAAAAAAGATGGGAAGACTGTAAGAGAAGCTCATGAAAAGTTGAAGGCTGGCAGTGTGGATGTCTTGCATTGCTACTATGCTCATGGTGAGGATAATGAAAACTTCCAACGAAGAAGTTATCGGATGCTTGACGAGCAGTTAGAGCACATTGTCCTTGTGCATTATCGAGAAATTAAAGAGGGCATCTCACATTCGTCTGTAGTTCCAGTTACCCTGGTTGGTGGTTCTCAAAATAGTTCAGTGCTTTCTTCTACCAAAATAAGCTCACCAATATCTGTAGTTCAGACACCTTTCACATCAAGTGAAAATAAAGTTTATCAGAATGGACGAGCTTCAGAGTATGAGGATGTCAATTCACGGAATGGTCCTCACGCATCCTCTCATGCTCAGCCTATCAGCAATTCCATACTTTGCAGTGCAGCTCGGCTTACTCATGAAACTGCTGGGTTTTCTGAGTTGTTGAGGAACCCCTTGATTTCATCATGGTCATCTTCTCTCCCTAGCTACTCTCCTGGTACTGGCTTGTCTCCCTGGACCTTAATTCAGAACTCTAGCAGAAACACAATTAACATGCATGATGGCAACCATCATGTTGAAGGATCTGTTGAAGTCTCTGAAGCTGACTTAACTGTTCATAAGCTAAGCAATGATGTGTTAGATGCTGTTCACAGAAAGCAAGATGGTGTAATTTTCAGAGATAGGCTCATCACTGACATGTGCATCCAGCCAGTTAAAGAAGATTTGCCTACTGTTAATCAGGTGCAGAGCGAGCATGGTCAGGATTCATTTCATGCTCAGTTCCATGATCATCCAGTTGTTGCAACTACTACAGTCCTAGTTGAACAGAAGCTTCAAGATGGTGGTTCAGACAGTAATGAATCAGAAAAAGTCGAATATGGGGAAATTAAGAAACTTGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGAGACTGTGATAATTCCTTGATGGCTTCAGATTCTGGTAATTATTGGAGTACCCTTGATGCTCATAATGAGGATAAGGAGGTATCTAGTTTTCGCCACATGCAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGACTTTTCTCCAGATTGGTCATATACTGGAGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTTGGGAGCAAAAAGCTCTCCAGTGACACGAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTGAAGTCTTGGCAGATAATGTCATACAGTGTCAGACTCCTCTGCATTCACCTGGTCGTGTACCATTCTATGTTACCTGCAGTAATAGGTTAGCCTGCAGCGAAGTCAGGGAATTTGTATTTGATGAACATCCAACCAAATTTTTAGGTCTTGTGAGTATTAAAATCTCACCAGAAGATGAGGTGCGGCTTCAAATGCGACTTCTTAAGCTACTACACTTGGGACCTGACAATAAGTGGTTGAAGTGCTCTGTTTCTGAATGTGAAAAATGTAAACTCAAGGGAACTATGTATTCCGTGAGAGATAATACTAATAGTGGACTATTTGAAGAAACTTTCCAGACTGATGGAATTGGTCATATAAACCGTAGAGATATTTTATTTCAGAGATTAATGAGAGACAAGCTTTATGAGTGGTTAGTATATAAGGTTCATGAAGGAGGAAAAGGACCACATGTGTTGGATGATGAAGGCCAAGGAGTAATACATTTGGCAGCTGCACTTGGTTATGGGTGGGCTATCGCCCCATTAGTTGCTGCTGGTGTCAGTCCTAACTTCAGAGACACTCGTGGAAGGACAGGACTTCACTGGGCATCATATTTTGGGAGAGAAGAAACTGTTATTGTGCTAGTTCAATTAGGTGCAGGTCCAGGTGCTGTTGAGGATCCAACGTCAGCATTTCCTGGAGGACAAACAGCAGCTGATTTAGCTTCAAGTAGAGGACATAAAGGAATTGCTGGATATTTGGCCGAGGCAGATCTGACTAATCAATTATCTGTGTTGACTGTGAAGGAAACTGGGACTGGAAACATAGTCACAACCACAACTATAGAAGCTAACAGTGCTGATGACACATCTAACTTGACAATGACAACGGATGAGCAGCATTATCTGAAACAGTCACTTAGTGTGTTTCGAAAATCAGCTGATGCAGCTGCTTCAATCCTAGCAGCCTTTAGAGCAAGGTCATTCTGTCAGAGACAACTAGCCAAAAGTAGCAGTGATAACATTTCTGAAGCAGTACTTGCTGCTGATTCTTTGAGCAAGATGGGTGGTCACTTTGAAGATTATTTAAATTTTCCAGCTTTGAAGATTCAAAAGAGATATCGAGGATGGAAAGGAAGAAAAGATTTTTTGAAGATACGGAACCGCATTGTAAAAATCCAGGCTCATATTAGAGGACACCAAGTTCGTAAGCAGTACAAAAAAGTTGTGTGGTCTGTTAGCATTGTGGAAAAGGCAATCCTGCGCTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCGCCAGATTGGGCATGCTGCCGTCCCCGACTCTGAGTATGAATTTCTTAGCATTGGGAGGAGACAAAAATCAGATGATGTAAAGAAAGCTCTTGATAGAGTCAAATCCATGATTCGTAACCCAGAGGCAAGGGATCAGTATATGAGGCTCATCATGAAATTTCACAACTTTAAGATTGATGATGGTCAATCACAGCATGTCGGTTAG 2874 0.4189 MMADTAKYIANSQLDLEEILQEAENRWLRPAEISLRFFRKDGHRWKKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYRMLDEQLEHIVLVHYREIKEGISHSSVVPVTLVGGSQNSSVLSSTKISSPISVVQTPFTSSENKVYQNGRASEYEDVNSRNGPHASSHAQPISNSILCSAARLTHETAGFSELLRNPLISSWSSSLPSYSPGTGLSPWTLIQNSSRNTINMHDGNHHVEGSVEVSEADLTVHKLSNDVLDAVHRKQDGVIFRDRLITDMCIQPVKEDLPTVNQVQSEHGQDSFHAQFHDHPVVATTTVLVEQKLQDGGSDSNESEKVEYGEIKKLDSFGRWMDKEIGGDCDNSLMASDSGNYWSTLDAHNEDKEVSSFRHMQLDMDSLGPSLSQEQLFSIHDFSPDWSYTGVRTKVLIVGTFLGSKKLSSDTKWGCMFGEIEVSAEVLADNVIQCQTPLHSPGRVPFYVTCSNRLACSEVREFVFDEHPTKFLGLVSIKISPEDEVRLQMRLLKLLHLGPDNKWLKCSVSECEKCKLKGTMYSVRDNTNSGLFEETFQTDGIGHINRRDILFQRLMRDKLYEWLVYKVHEGGKGPHVLDDEGQGVIHLAAALGYGWAIAPLVAAGVSPNFRDTRGRTGLHWASYFGREETVIVLVQLGAGPGAVEDPTSAFPGGQTAADLASSRGHKGIAGYLAEADLTNQLSVLTVKETGTGNIVTTTTIEANSADDTSNLTMTTDEQHYLKQSLSVFRKSADAAASILAAFRARSFCQRQLAKSSSDNISEAVLAADSLSKMGGHFEDYLNFPALKIQKRYRGWKGRKDFLKIRNRIVKIQAHIRGHQVRKQYKKVVWSVSIVEKAILRWRRKGAGLRGFRQIGHAAVPDSEYEFLSIGRRQKSDDVKKALDRVKSMIRNPEARDQYMRLIMKFHNFKIDDGQSQHVG 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2255 957 ProSiteProfiles IQ motif profile. 819 848 IPR000048 GO:0005515
Aed6g2255 957 ProSiteProfiles CG-1 DNA-binding domain profile. 1 111 IPR005559 GO:0003677
Aed6g2255 957 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 933 - -
Aed6g2255 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 811 869 IPR027417 -
Aed6g2255 957 SMART CG_1_2 19 106 IPR005559 GO:0003677
Aed6g2255 957 Gene3D - 819 866 - -
Aed6g2255 957 Pfam CG-1 domain 34 104 IPR005559 GO:0003677
Aed6g2255 957 SUPERFAMILY Ankyrin repeat 602 713 IPR036770 -
Aed6g2255 957 Pfam IPT/TIG domain 417 491 IPR002909 -
Aed6g2255 957 CDD IPT_PCSR 416 483 - -
Aed6g2255 957 Gene3D Immunoglobulins 410 508 IPR013783 -
Aed6g2255 957 SUPERFAMILY E set domains 417 502 IPR014756 -
Aed6g2255 957 Gene3D - 591 720 IPR036770 -
Aed6g2255 957 ProSiteProfiles Ankyrin repeat region circular profile. 651 676 - -
Aed6g2255 957 SMART iq_5 818 840 IPR000048 GO:0005515
Aed6g2255 957 SMART iq_5 841 863 IPR000048 GO:0005515
Aed6g2255 957 SMART ANK_2a 651 680 IPR002110 GO:0005515
Aed6g2255 957 SMART ANK_2a 690 720 IPR002110 GO:0005515
Aed6g2255 957 Pfam IQ calmodulin-binding motif 823 839 IPR000048 GO:0005515
Aed6g2255 957 Pfam IQ calmodulin-binding motif 845 863 IPR000048 GO:0005515
Aed6g2255 957 ProSiteProfiles IQ motif profile. 842 870 IPR000048 GO:0005515
Aed6g2255 957 ProSiteProfiles Ankyrin repeat profile. 651 683 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2255 Aed-Chr6 24637749 24644981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2255 349 953 CAMTA Transcription Factor Family AT5G64220 43.243 1.32e-155 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Aed6g2255 TIG 1.5e-05 CL0159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2255 K21596 - gmx:100818336 1564.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2255 6 24637749 24644981 Aed6g2255 6 24637749 24644981 ECH