Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2248 ATGAAAAAAGCTGTTGTTGGGGATGGGAAGAGGAGTTTGGAATGGGATTTGAATGACTGGAGATGGGATGGTGATCTTTTCACTGCTCAACCACTGAGTTCAGTGGCATCAGATTGTAGGAGTCGCCAGTTTTTCCCACCTCATTCTGAAATTCCTGCAAAAAATGCTAATCCATCAACCACCAATTTGTCTTCTTTAGGTGAGGGAAAGAGGGAATTGGAGAAAAGGAGGAGGGGTGTTATAGGTGAAGGTGAAGAAGGGGAAGGGCTGAATGATGAGGGTGGTTCTCTTAGTTTGAACCTTGGGGGTCAAGGTTACCCTCTCATGGTGGAATTAGGAGAGGAAAAAAGTGGAAAGAAAACAAAGATAATTGGGACCACTACAGCTACTACCTCTAACCGTGCTATTTGTCAGGTGCAAGATTGTAGGGCTGATCTTAGTAATGCCAAGGATTACCACCGTCGGCACAAGGTTTGTGATGTTCATTCTAAGGCCACTATGGCACTAGTGGCAAATGTTATGCAACGTTTCTGTCAACAATGTAGCAGGTTTCATGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGTTGCCGTAGGCGTCTTGCAGGCCACAACAGGAGGAGGAGGAAAACTCATCCTGATGTTACTGTTGTTAATGAAGGCTCTCGGAATGATGAGAGGGGCAGTAACTATCTCTTAACAAGTCTATTACGGATACTGACCAATTTGCATAAAAATGGCTCATATCAGACAAGGAACCAGGATATTCTTTCTCATCTGCTGAGGAACCTGGCAAGTCTGGCTGGTTCAAATAATGGTAGAAGTATAGCTTCCTTATTGGAGGACGCTAAAGGTTTGGTAAATGCTGGGAAACCTGGAGCTGCTCATGATAAACCCAACCTTAATTCAAATGCTCCTGAAGCTTCCAGCCCTTCTGGTTCTTCCATCAAGACAGACAATGGAATCATCAGTCAGAACCCTCCAATGTCGGTGACGGTGCAGTGTGAAACAGTTCATGCTAATGGCAGGACACAAAAATGTATCCCTTCAGGACCACTGTTTTCAAGTGTATGTGAATCAAGGGACAGACTTCCATCCCAATTGATTGCAGCAAAGACTAAAGTAAGAAGGGACACTTTAAACAACATTGACCTTAATAATGTATACAATGATATACAGAATACTATTGAGAAGCCTTATCCTCCTGTGGCTTCAGAGATTGTGTCTATTGATCATCCCCCATGGTTGCAATGTGATTCTCTCAAATCAAGTCCTCCACAGACAAGTGGAAACTCAGATTCAACCTCTACCCAATCACCATCTAGTTTCAGTGGAGAAGCTCAGAGTCGGACAGATCGAATTGTTTTTAAACTCTTTGGCAAGGATCCAAATGATTTTCCCCTTCTTCTCCGATCACAGATTCTCAATTGGTTATCCTGCAGTCCCACGGAGATAGAGAGCTATATAAGGCCAGGTTGTATCATATTAACAATATATCTCCGTCTTGAAAAATCTGCATGGGAAGAGCTCTACTGTAATCTAGGATCAAGCTTGAGAAAGCTTCTTGCTGCATCAAATGATTCATTCTGGAGAACAGGATGGATATATGCAAGGGTGCAGCACTCTGTAGCTTTTCTGTATAACGGGCAGGTAGTCTTAGATGTACCCTTGCGTCTCAAAAGCCCACAACATTGTATGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCTAGTGCTCAATTTATTTTGAAAGGTTTCAACCTTTTCCAGTCTAGCACAAGGTTCCTCTGTGCGCTTGAAGGGAAGTATCTGGTACATGCTAGTTGTCATGATTTAATTGATGGAGCTGATGCTCCCATTCAGCATCTCAGCTTCTCTTGCCATATACCAAATGTAACTGGGAGGGGGTTTATTGAGGTGGTGGAAGATCAAGGTCTTAGCAGCTGTTCCTTTCCATTTATAGTTGCAGAACAGGAAGTTTGTTTAGAGATCTGCAAGTTGGAGAATGTGATTGAGGCAGCTGAAACCACTGATGACATCCAGATAAAAAACCATCAAATGGAAGAAAAGACTCGAGCTTTAGATTTCTTGCAAGAAATGGGTTGGCTCCTTCATAGAAGTCATGTGAAAGTTAGGCTAGGGCCCTTGGCTCCTATCCATGATCTCTTCCAATTCAATCGGTTCGCTTGGCTCGTTGACTTCTCCATGGACCATGGTTGGTGTGCTGTGATGAAGAAACTCTTGGACATTATATTTGAGGGTGGTGTTGATTTAGGAGAGCATGTCTCCATTGAGCTTGCATTGTTAGACATGGGTCTTCTACACAAAGCTGTGAAGAGAAACTGTAGGCCTATGGTAGAACTACTGTTAAGATTTGTGCCAGCTAAAACCTCAGATGGTGCTGAGAGTGAAGTGAAGCAAGTTGACAAGGCCCTTGAAAGATTCTTATTTAGACCTGATATTGTTGGGCCAGCTGGATTGACTCCTCTTCATGTTGCTGCTTGTATGAGTGGCTTGGAGAACGTCTTGGATGCATTAACTGATGATCCAGGAATGGTAGGAATTGAGGCATGGAAAAGTGCCCGGGACAGTACAGGTGTGACCCCCAACGACTATGCAAGCCTTCGGGGCTATTATTCCTACATTCAACTTATCCAGAAGAAGAGGAAGAAGACCAACAGACAACATGTGGTTGATATCCTTGCCTCTAATGTGGATAGTAACACAATGCAGAAGCAATCATGTAGAGTTTCAAGCTTAGAGACTGAGAAGATTGAAACCACAGCAGCAATGCAACGGCGGCAATGTCCGGTATGCGAGCAGAAGGTGGCTAATTATGGTGGCATGAGAACATCAGCACTGGTTTATAGGCCGTTCATGCTCTCCATGGTGACCATAGCAGCTGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGTTCACCTAGAGTTTACTATGTGTTCCAGCCCTTCAACTGGGAATCATTGGAGTATGGGGCAATATAA 3009 0.436 MKKAVVGDGKRSLEWDLNDWRWDGDLFTAQPLSSVASDCRSRQFFPPHSEIPAKNANPSTTNLSSLGEGKRELEKRRRGVIGEGEEGEGLNDEGGSLSLNLGGQGYPLMVELGEEKSGKKTKIIGTTTATTSNRAICQVQDCRADLSNAKDYHRRHKVCDVHSKATMALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDVTVVNEGSRNDERGSNYLLTSLLRILTNLHKNGSYQTRNQDILSHLLRNLASLAGSNNGRSIASLLEDAKGLVNAGKPGAAHDKPNLNSNAPEASSPSGSSIKTDNGIISQNPPMSVTVQCETVHANGRTQKCIPSGPLFSSVCESRDRLPSQLIAAKTKVRRDTLNNIDLNNVYNDIQNTIEKPYPPVASEIVSIDHPPWLQCDSLKSSPPQTSGNSDSTSTQSPSSFSGEAQSRTDRIVFKLFGKDPNDFPLLLRSQILNWLSCSPTEIESYIRPGCIILTIYLRLEKSAWEELYCNLGSSLRKLLAASNDSFWRTGWIYARVQHSVAFLYNGQVVLDVPLRLKSPQHCMISCIKPLAVPASASAQFILKGFNLFQSSTRFLCALEGKYLVHASCHDLIDGADAPIQHLSFSCHIPNVTGRGFIEVVEDQGLSSCSFPFIVAEQEVCLEICKLENVIEAAETTDDIQIKNHQMEEKTRALDFLQEMGWLLHRSHVKVRLGPLAPIHDLFQFNRFAWLVDFSMDHGWCAVMKKLLDIIFEGGVDLGEHVSIELALLDMGLLHKAVKRNCRPMVELLLRFVPAKTSDGAESEVKQVDKALERFLFRPDIVGPAGLTPLHVAACMSGLENVLDALTDDPGMVGIEAWKSARDSTGVTPNDYASLRGYYSYIQLIQKKRKKTNRQHVVDILASNVDSNTMQKQSCRVSSLETEKIETTAAMQRRQCPVCEQKVANYGGMRTSALVYRPFMLSMVTIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGAI 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2248 1002 Pfam SBP domain 137 210 IPR004333 GO:0003677
Aed6g2248 1002 MobiDBLite consensus disorder prediction 53 67 - -
Aed6g2248 1002 SUPERFAMILY Ankyrin repeat 769 890 IPR036770 -
Aed6g2248 1002 MobiDBLite consensus disorder prediction 290 323 - -
Aed6g2248 1002 ProSiteProfiles Zinc finger SBP-type profile. 134 211 IPR004333 GO:0003677
Aed6g2248 1002 MobiDBLite consensus disorder prediction 46 96 - -
Aed6g2248 1002 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 7 1001 - -
Aed6g2248 1002 MobiDBLite consensus disorder prediction 302 323 - -
Aed6g2248 1002 Gene3D - 128 198 IPR036893 GO:0003677|GO:0005634
Aed6g2248 1002 MobiDBLite consensus disorder prediction 68 85 - -
Aed6g2248 1002 MobiDBLite consensus disorder prediction 420 448 - -
Aed6g2248 1002 Gene3D - 764 914 IPR036770 -
Aed6g2248 1002 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 1001 IPR044817 GO:0003677
Aed6g2248 1002 MobiDBLite consensus disorder prediction 202 224 - -
Aed6g2248 1002 SUPERFAMILY SBT domain 135 216 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2248 Aed-Chr6 24586110 24591516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2248 9 1001 SBP-box Gene Family AT3G60030 47.384 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed6g2248 SBP 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2248 - - gsj:114419913 1588.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2248 6 24586110 24591516 Aed6g2248 6 24586110 24591516 ECH