Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2247 ATGGGTTGCTTTGGCTTCTGCAAAGGAGATGATAGTGTTACAGTTGCTGACAGAGGACCTTTTACACAAAGCACTCCTACTGGGAACCCCAGTTATCATGGAAGACACACAGCAGTAACTGCTCCTCGGACTATAAATTTCCAACCGATTGCTGTCCCTTCCATTGCAGTAGATGAATTGAAGTCTTTGACAGATAACTTTGGCTCAAAATTTTTCATTGGTGAGGGTGCATATGGGAAAGTATATAATGCCACATTGAAAAATGGACGTGCAGTGGTAATCAAGAAGTTAGATTCCAGTAATCAGCCAGAGCAGGAATTTCTTTCTCAGGTCTCCATCGTATCAAGGCTAAAGCATGAAAATGTTGTCGAGCTTGTTAACTATTGTGTTGATGGTCCTTTCCGTGCCCTTTCCTATGAGTATGCTTCTAAAGGATCCCTTCACGATATTCTACATGATAAGGTGAAGCAGTGTGTTGATGTCAGACTCAAGGGAGAGTACCCTTCTAAGTCAGTTGCAAAGATGGCTGCTGTTGCTGCATTGTGTGTGCAATATGAAGCTGAGTTTCGACCAAATATGAGCATTATAGTGAAAGCTCTACAGCCTCTACTGAATACTCGTTCTGTTCACTCAAACTCAAAGGAATATCAATCACCCAACATGTAA 666 0.4189 MGCFGFCKGDDSVTVADRGPFTQSTPTGNPSYHGRHTAVTAPRTINFQPIAVPSIAVDELKSLTDNFGSKFFIGEGAYGKVYNATLKNGRAVVIKKLDSSNQPEQEFLSQVSIVSRLKHENVVELVNYCVDGPFRALSYEYASKGSLHDILHDKVKQCVDVRLKGEYPSKSVAKMAAVAALCVQYEAEFRPNMSIIVKALQPLLNTRSVHSNSKEYQSPNM 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2247 221 ProSiteProfiles Protein kinase domain profile. 67 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g2247 221 SMART tyrkin_6 65 200 IPR020635 GO:0004713|GO:0006468
Aed6g2247 221 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 153 212 - -
Aed6g2247 221 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 152 - -
Aed6g2247 221 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 153 212 - -
Aed6g2247 221 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 152 - -
Aed6g2247 221 Gene3D Phosphorylase Kinase; domain 1 32 141 - -
Aed6g2247 221 Pfam Protein tyrosine and serine/threonine kinase 73 159 IPR001245 GO:0004672|GO:0006468
Aed6g2247 221 SUPERFAMILY Protein kinase-like (PK-like) 46 155 IPR011009 -
Aed6g2247 221 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2247 Aed-Chr6 24576100 24580698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2247 35 161 Receptor kinase-like Gene Family AT4G39400 37.692 9.01e-21 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Aed6g2247 PK_Tyr_Ser-Thr 2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2247 K13436 - gmx:547596 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2247 6 24576100 24580698 Aed6g2247 6 24576100 24580698 ECH