Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2233 ATGGAAGGGGATATAATTGTGAATGGAGATCCTAACACAAACAGCAATCAAGACTCAAACAAGAGTGAGGCCAAAGGTGAACCCACCAAAACAGTACCCTTGTACAAGCTTTTCACTTTTGCTGATCCTTTGGATCACTTGTTGATGCTTGTGGGGACTGTTGGTGCTATTGGCAATGGAATCTCTTTGCCCTTAATGACTCTGATATTTGGAAATATGATCAATGCATTTGGAGGAAACAGTGACACCAGCGACGTCGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCTGTGGGTACCTTTTTCGCGTCACTTATGCAGATGACAGGCTGGATGATCACTGGGGAGAGACAAGCTGCAAGAATTAGAGGCTTATACCTTCAAACAATTTTGAGGCAAGATGTCACTTTCTTTGATAAAGAGACTAATACTGGAGAGGTTGTTGGAAGGATGTCTGGTGACACTGTTCTTATTCAAGATGCCATGGGTGAAAAGGTAGGACAGTTCATACAGTTAATAGCAACTTTCTTTGGAGGTTTTGTGGTAGCATTCATCAAGGGATGGCTTCTAACTGTTGTCATGTTATCCTGTATTCCACTTCTTGTATTGGCTGGGGCTATGATGAGTCTGATTATTACAAAAACATCATCCAAAGGACAAGCTGCTTATTCCACAGCAGCAAGTGTAGTAGAACAGACAGTTGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAGGCTGGCTATAGCTAAATACAATCAGTCTTTAATCAAGGCATACAAGACTGGAGTGCAGGAGGCACTAGCTTCTGGTTTGGGGTTTGGTGCGCTCTTCTTTGTTTTTATCAGCAGTTATGGTCTGGCTGTATGGTTTGGTGCAAAAATGATAATAGAGAAAGGATATACTGGAGGAGACGTTGTGACCGTAATATTTGCTGTATTAACTGGCTCAATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCGGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATCAAAAGGAAGCCAGAAATCGATGCCTATGACACTACTGGTAGGAAGCTTGAAGACATTCACGGTGATATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCTGATGAACTAATATTCAATGGATTTTCTCTTTCAATACCAAGTGGCACTACTGCAGCTTTGGTAGGACAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTACGATCCACAGTCTGGTGCTGTACTTATTGATGGTATCAACCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCCGTTCTCTTTACTTGCAGTATTAAAGACAATATTGCTTATGGCAAGGGTGGTGCAACTGATGAAGAAATCAGAGCTGCAGCTGAACTAGCCAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTTGACACAATGGTTGGTGAGCATGGTACACAGCTCTCTGGGGGCCAAAAGCAGAGAGTGGCAATAGCAAGAGCAATTTTGAAAGATCCAAGAATCCTACTTCTGGATGAAGCAACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCACTGGACAGAATAATGATAAACAGAACAACTGTCATTGTAGCCCACCGATTGAGTACTATAAGGAATGCTGATACCATTGCTGTTATCCATCAAGGAAAAATAGTTGAAAGAGGTTCACATGCTGAGCTCACCAAGGATCCTGATGGAGCCTATAGCCAGCTTATCAGACTACAAGAAATTAAGAGGTCAGAACGGAATGCAGATGATAGAGACAAATCTGAAAGTATAGGGCATTCTGGAAGACATTCAAGTAAAAGGTCTTCTTTTTTAAGATCTATAAGCAGAGAGTCATTGGGAGTAGGAAACAGTGGTCGCCATTCATTCTCAGCATCATTCGGGGTCCCCACATCAAGTGGCTTCATAGAACCTGCAGGTGAAGGGCCTGAAGATCCTCCTTCAACAGCTCCTTCACCACCAGAAGTCCCTCTTTATCGGCTGGCTTATCTAAACAAGCCAGAGATTCCAGTGTTACTGATGGGGACTGTAGCTGCAGTGATAACTGGAGTAATATTCCCTGTTTATGGTCTCTTGATTTCCAAAATGATTAGTATTTTCTATGAGCCAGCTCATGAACTCCGTAAAGATTCAAAAGTTTGGGCATTAGTATTTGTTGCACTCGGTGTGGTATCATTCATTGTCTATCCAGGTAGATTCTACTTTTTTGGAGTTGCTGGGGGTAAGTTGATCCAAAGGATCCGGAAAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTAAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCAATTGGAGCAAGACTTTCTACTGATGCAGCTTCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATTGCCACCGCAGTAGCTGGATTGGCAATTGCCTTTGAATCAAGCTGGCAGCTTGCTCTTATAATCCTTGCTTTGGTGCCTCTACTAGGTCTAAATGGATATCTGCAATTCAAGTTCTTGAAAGGATTCAGTGCAGATTCAAAGAAATTGTACGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTGGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCAGGAAAAATGTGAAGGACCAATCAAGACAGGCATAAGGCAAGGGATAATAAGTGGAATTAGTTTTGGAGTGTCATTCTTTGTGCTGTATGCTGTTTATGCTACCAGTTTTTATGCTGGAGCTCGACTGGTAGATGCTGGAAAAACATCATTCAATGATGTTTTCCGGGTCTTTTTTGCTCTCAGTATGGCAGCTATAGGAATCTCTCAATCTGGCTCTTTGGTCCCTGATTCAACTAAAGCTAAAAGTGCTGCTGCTTCCATATTTGCCATTCTTGACCGAAAGTCACAAATAGACCCAAGTGATGACTCTGGAATGACACTGGAAGAAGTCAAGGGAGAGATTGAACTTAAGCATGTTAGTTTCAAGTATTCTACCAGACCTGATGTTCAAATATTCAGAGATCTTAGCTTGACCATTCATAGCGGCAAGACGGTAGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACGGTGATCTCATTATTACAAAGATTTTATGACCCAGACTCCGGTCACATTACACTGGATGGTAAAGAAATCCAAAGTATGCAAGTTAAGTGGCTGAGACAACAGATGGGCCTTGTGAGTCAAGAGCCTGTGTTGTTTAATGACACCATCAGAGCCAATATTGCATATGGAAAAGGAGATGCAACTGAGGCAGAAATCATAGCTGCAGCAGAATTGGCAAATGCTCATAAGTTCATTAGTAGTTTGCAGAAGGGTTATGACACGTTAGTAGGGGAGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGTGTGGCAATTGCACGAGCTATAGTGAAGAATCCAAAAGTATTATTACTAGATGAGGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTAGACCGTGTTATGGTGGACCGAACCACAATAGTGGTGGCTCATAGGTTATCAACCATAAAGGGTGCGGATTTAATTGCAGTAGTTAAAAATGGGGTCATAGCAGAGAAGGGAAAGCATCAAGCATTGCTCAACAAGGGAGGTGACTATGCTTCCTTAGTAGCGTTGCATACAACTGCTTCTACTTCTTAG 3825 0.4241 MEGDIIVNGDPNTNSNQDSNKSEAKGEPTKTVPLYKLFTFADPLDHLLMLVGTVGAIGNGISLPLMTLIFGNMINAFGGNSDTSDVVDEVSKVSLKFVYLAVGTFFASLMQMTGWMITGERQAARIRGLYLQTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLIATFFGGFVVAFIKGWLLTVVMLSCIPLLVLAGAMMSLIITKTSSKGQAAYSTAASVVEQTVGSIRTVASFTGERLAIAKYNQSLIKAYKTGVQEALASGLGFGALFFVFISSYGLAVWFGAKMIIEKGYTGGDVVTVIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRKLEDIHGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQSGAVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKDNIAYGKGGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHAELTKDPDGAYSQLIRLQEIKRSERNADDRDKSESIGHSGRHSSKRSSFLRSISRESLGVGNSGRHSFSASFGVPTSSGFIEPAGEGPEDPPSTAPSPPEVPLYRLAYLNKPEIPVLLMGTVAAVITGVIFPVYGLLISKMISIFYEPAHELRKDSKVWALVFVALGVVSFIVYPGRFYFFGVAGGKLIQRIRKMCFEKVVHMEVSWFDEAEHSSGAIGARLSTDAASVRALVGDALGLLVQNIATAVAGLAIAFESSWQLALIILALVPLLGLNGYLQFKFLKGFSADSKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKCEGPIKTGIRQGIISGISFGVSFFVLYAVYATSFYAGARLVDAGKTSFNDVFRVFFALSMAAIGISQSGSLVPDSTKAKSAAASIFAILDRKSQIDPSDDSGMTLEEVKGEIELKHVSFKYSTRPDVQIFRDLSLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIQSMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGDATEAEIIAAAELANAHKFISSLQKGYDTLVGERGVQLSGGQKQRVAIARAIVKNPKVLLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHQALLNKGGDYASLVALHTTASTS 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2233 1274 Pfam ABC transporter transmembrane region 49 323 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g2233 1274 Pfam ABC transporter transmembrane region 709 979 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g2233 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 372 608 IPR003439 GO:0005524
Aed6g2233 1274 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 13 1270 - -
Aed6g2233 1274 SUPERFAMILY ABC transporter transmembrane region 36 356 IPR036640 GO:0005524|GO:0016021
Aed6g2233 1274 MobiDBLite consensus disorder prediction 613 640 - -
Aed6g2233 1274 Pfam ABC transporter 1050 1198 IPR003439 GO:0005524
Aed6g2233 1274 ProSitePatterns ABC transporters family signature. 1170 1184 IPR017871 GO:0005524
Aed6g2233 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 610 IPR027417 -
Aed6g2233 1274 MobiDBLite consensus disorder prediction 1 28 - -
Aed6g2233 1274 MobiDBLite consensus disorder prediction 8 22 - -
Aed6g2233 1274 Gene3D ABC transporter type 1, transmembrane domain 95 1005 IPR036640 GO:0005524|GO:0016021
Aed6g2233 1274 Gene3D - 1021 1273 IPR027417 -
Aed6g2233 1274 SMART AAA_5 399 585 IPR003593 -
Aed6g2233 1274 SMART AAA_5 1058 1250 IPR003593 -
Aed6g2233 1274 Pfam ABC transporter 391 539 IPR003439 GO:0005524
Aed6g2233 1274 SUPERFAMILY ABC transporter transmembrane region 697 1015 IPR036640 GO:0005524|GO:0016021
Aed6g2233 1274 PANTHER - 13 1270 - -
Aed6g2233 1274 MobiDBLite consensus disorder prediction 613 633 - -
Aed6g2233 1274 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 333 - -
Aed6g2233 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1031 1267 IPR003439 GO:0005524
Aed6g2233 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 337 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g2233 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1020 1267 IPR027417 -
Aed6g2233 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 710 996 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g2233 1274 Gene3D - 370 623 IPR027417 -
Aed6g2233 1274 CDD ABC_MTABC3_MDL1_MDL2 1031 1265 - -
Aed6g2233 1274 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524
Aed6g2233 1274 CDD ABC_6TM_Pgp_ABCB1_D2_like 699 1014 - -
Aed6g2233 1274 CDD ABC_MTABC3_MDL1_MDL2 372 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2233 Aed-Chr6 24495401 24501368 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2233 50 616 Calmodulin-binding Proteins AT2G36910 38.609 3.42e-113 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2233 K05658 - gmx:100800293 2202.94