Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed6g2233 | ATGGAAGGGGATATAATTGTGAATGGAGATCCTAACACAAACAGCAATCAAGACTCAAACAAGAGTGAGGCCAAAGGTGAACCCACCAAAACAGTACCCTTGTACAAGCTTTTCACTTTTGCTGATCCTTTGGATCACTTGTTGATGCTTGTGGGGACTGTTGGTGCTATTGGCAATGGAATCTCTTTGCCCTTAATGACTCTGATATTTGGAAATATGATCAATGCATTTGGAGGAAACAGTGACACCAGCGACGTCGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCTGTGGGTACCTTTTTCGCGTCACTTATGCAGATGACAGGCTGGATGATCACTGGGGAGAGACAAGCTGCAAGAATTAGAGGCTTATACCTTCAAACAATTTTGAGGCAAGATGTCACTTTCTTTGATAAAGAGACTAATACTGGAGAGGTTGTTGGAAGGATGTCTGGTGACACTGTTCTTATTCAAGATGCCATGGGTGAAAAGGTAGGACAGTTCATACAGTTAATAGCAACTTTCTTTGGAGGTTTTGTGGTAGCATTCATCAAGGGATGGCTTCTAACTGTTGTCATGTTATCCTGTATTCCACTTCTTGTATTGGCTGGGGCTATGATGAGTCTGATTATTACAAAAACATCATCCAAAGGACAAGCTGCTTATTCCACAGCAGCAAGTGTAGTAGAACAGACAGTTGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAGGCTGGCTATAGCTAAATACAATCAGTCTTTAATCAAGGCATACAAGACTGGAGTGCAGGAGGCACTAGCTTCTGGTTTGGGGTTTGGTGCGCTCTTCTTTGTTTTTATCAGCAGTTATGGTCTGGCTGTATGGTTTGGTGCAAAAATGATAATAGAGAAAGGATATACTGGAGGAGACGTTGTGACCGTAATATTTGCTGTATTAACTGGCTCAATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCGGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATCAAAAGGAAGCCAGAAATCGATGCCTATGACACTACTGGTAGGAAGCTTGAAGACATTCACGGTGATATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCTGATGAACTAATATTCAATGGATTTTCTCTTTCAATACCAAGTGGCACTACTGCAGCTTTGGTAGGACAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTACGATCCACAGTCTGGTGCTGTACTTATTGATGGTATCAACCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCCGTTCTCTTTACTTGCAGTATTAAAGACAATATTGCTTATGGCAAGGGTGGTGCAACTGATGAAGAAATCAGAGCTGCAGCTGAACTAGCCAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTTGACACAATGGTTGGTGAGCATGGTACACAGCTCTCTGGGGGCCAAAAGCAGAGAGTGGCAATAGCAAGAGCAATTTTGAAAGATCCAAGAATCCTACTTCTGGATGAAGCAACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCACTGGACAGAATAATGATAAACAGAACAACTGTCATTGTAGCCCACCGATTGAGTACTATAAGGAATGCTGATACCATTGCTGTTATCCATCAAGGAAAAATAGTTGAAAGAGGTTCACATGCTGAGCTCACCAAGGATCCTGATGGAGCCTATAGCCAGCTTATCAGACTACAAGAAATTAAGAGGTCAGAACGGAATGCAGATGATAGAGACAAATCTGAAAGTATAGGGCATTCTGGAAGACATTCAAGTAAAAGGTCTTCTTTTTTAAGATCTATAAGCAGAGAGTCATTGGGAGTAGGAAACAGTGGTCGCCATTCATTCTCAGCATCATTCGGGGTCCCCACATCAAGTGGCTTCATAGAACCTGCAGGTGAAGGGCCTGAAGATCCTCCTTCAACAGCTCCTTCACCACCAGAAGTCCCTCTTTATCGGCTGGCTTATCTAAACAAGCCAGAGATTCCAGTGTTACTGATGGGGACTGTAGCTGCAGTGATAACTGGAGTAATATTCCCTGTTTATGGTCTCTTGATTTCCAAAATGATTAGTATTTTCTATGAGCCAGCTCATGAACTCCGTAAAGATTCAAAAGTTTGGGCATTAGTATTTGTTGCACTCGGTGTGGTATCATTCATTGTCTATCCAGGTAGATTCTACTTTTTTGGAGTTGCTGGGGGTAAGTTGATCCAAAGGATCCGGAAAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTAAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCAATTGGAGCAAGACTTTCTACTGATGCAGCTTCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATTGCCACCGCAGTAGCTGGATTGGCAATTGCCTTTGAATCAAGCTGGCAGCTTGCTCTTATAATCCTTGCTTTGGTGCCTCTACTAGGTCTAAATGGATATCTGCAATTCAAGTTCTTGAAAGGATTCAGTGCAGATTCAAAGAAATTGTACGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTGGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCAGGAAAAATGTGAAGGACCAATCAAGACAGGCATAAGGCAAGGGATAATAAGTGGAATTAGTTTTGGAGTGTCATTCTTTGTGCTGTATGCTGTTTATGCTACCAGTTTTTATGCTGGAGCTCGACTGGTAGATGCTGGAAAAACATCATTCAATGATGTTTTCCGGGTCTTTTTTGCTCTCAGTATGGCAGCTATAGGAATCTCTCAATCTGGCTCTTTGGTCCCTGATTCAACTAAAGCTAAAAGTGCTGCTGCTTCCATATTTGCCATTCTTGACCGAAAGTCACAAATAGACCCAAGTGATGACTCTGGAATGACACTGGAAGAAGTCAAGGGAGAGATTGAACTTAAGCATGTTAGTTTCAAGTATTCTACCAGACCTGATGTTCAAATATTCAGAGATCTTAGCTTGACCATTCATAGCGGCAAGACGGTAGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACGGTGATCTCATTATTACAAAGATTTTATGACCCAGACTCCGGTCACATTACACTGGATGGTAAAGAAATCCAAAGTATGCAAGTTAAGTGGCTGAGACAACAGATGGGCCTTGTGAGTCAAGAGCCTGTGTTGTTTAATGACACCATCAGAGCCAATATTGCATATGGAAAAGGAGATGCAACTGAGGCAGAAATCATAGCTGCAGCAGAATTGGCAAATGCTCATAAGTTCATTAGTAGTTTGCAGAAGGGTTATGACACGTTAGTAGGGGAGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGTGTGGCAATTGCACGAGCTATAGTGAAGAATCCAAAAGTATTATTACTAGATGAGGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTAGACCGTGTTATGGTGGACCGAACCACAATAGTGGTGGCTCATAGGTTATCAACCATAAAGGGTGCGGATTTAATTGCAGTAGTTAAAAATGGGGTCATAGCAGAGAAGGGAAAGCATCAAGCATTGCTCAACAAGGGAGGTGACTATGCTTCCTTAGTAGCGTTGCATACAACTGCTTCTACTTCTTAG | 3825 | 0.4241 | MEGDIIVNGDPNTNSNQDSNKSEAKGEPTKTVPLYKLFTFADPLDHLLMLVGTVGAIGNGISLPLMTLIFGNMINAFGGNSDTSDVVDEVSKVSLKFVYLAVGTFFASLMQMTGWMITGERQAARIRGLYLQTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLIATFFGGFVVAFIKGWLLTVVMLSCIPLLVLAGAMMSLIITKTSSKGQAAYSTAASVVEQTVGSIRTVASFTGERLAIAKYNQSLIKAYKTGVQEALASGLGFGALFFVFISSYGLAVWFGAKMIIEKGYTGGDVVTVIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRKLEDIHGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQSGAVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKDNIAYGKGGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHAELTKDPDGAYSQLIRLQEIKRSERNADDRDKSESIGHSGRHSSKRSSFLRSISRESLGVGNSGRHSFSASFGVPTSSGFIEPAGEGPEDPPSTAPSPPEVPLYRLAYLNKPEIPVLLMGTVAAVITGVIFPVYGLLISKMISIFYEPAHELRKDSKVWALVFVALGVVSFIVYPGRFYFFGVAGGKLIQRIRKMCFEKVVHMEVSWFDEAEHSSGAIGARLSTDAASVRALVGDALGLLVQNIATAVAGLAIAFESSWQLALIILALVPLLGLNGYLQFKFLKGFSADSKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKCEGPIKTGIRQGIISGISFGVSFFVLYAVYATSFYAGARLVDAGKTSFNDVFRVFFALSMAAIGISQSGSLVPDSTKAKSAAASIFAILDRKSQIDPSDDSGMTLEEVKGEIELKHVSFKYSTRPDVQIFRDLSLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIQSMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGDATEAEIIAAAELANAHKFISSLQKGYDTLVGERGVQLSGGQKQRVAIARAIVKNPKVLLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHQALLNKGGDYASLVALHTTASTS | 1274 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed6g2233 | 1274 | Pfam | ABC transporter transmembrane region | 49 | 323 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Aed6g2233 | 1274 | Pfam | ABC transporter transmembrane region | 709 | 979 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Aed6g2233 | 1274 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 372 | 608 | IPR003439 | GO:0005524 | |
Aed6g2233 | 1274 | PANTHER | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL | 13 | 1270 | - | - | |
Aed6g2233 | 1274 | SUPERFAMILY | ABC transporter transmembrane region | 36 | 356 | IPR036640 | GO:0005524|GO:0016021 | |
Aed6g2233 | 1274 | MobiDBLite | consensus disorder prediction | 613 | 640 | - | - | |
Aed6g2233 | 1274 | Pfam | ABC transporter | 1050 | 1198 | IPR003439 | GO:0005524 | |
Aed6g2233 | 1274 | ProSitePatterns | ABC transporters family signature. | 1170 | 1184 | IPR017871 | GO:0005524 | |
Aed6g2233 | 1274 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 364 | 610 | IPR027417 | - | |
Aed6g2233 | 1274 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Aed6g2233 | 1274 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - | |
Aed6g2233 | 1274 | Gene3D | ABC transporter type 1, transmembrane domain | 95 | 1005 | IPR036640 | GO:0005524|GO:0016021 | |
Aed6g2233 | 1274 | Gene3D | - | 1021 | 1273 | IPR027417 | - | |
Aed6g2233 | 1274 | SMART | AAA_5 | 399 | 585 | IPR003593 | - | |
Aed6g2233 | 1274 | SMART | AAA_5 | 1058 | 1250 | IPR003593 | - | |
Aed6g2233 | 1274 | Pfam | ABC transporter | 391 | 539 | IPR003439 | GO:0005524 | |
Aed6g2233 | 1274 | SUPERFAMILY | ABC transporter transmembrane region | 697 | 1015 | IPR036640 | GO:0005524|GO:0016021 | |
Aed6g2233 | 1274 | PANTHER | - | 13 | 1270 | - | - | |
Aed6g2233 | 1274 | MobiDBLite | consensus disorder prediction | 613 | 633 | - | - | |
Aed6g2233 | 1274 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 49 | 333 | - | - | |
Aed6g2233 | 1274 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1031 | 1267 | IPR003439 | GO:0005524 | |
Aed6g2233 | 1274 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 50 | 337 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Aed6g2233 | 1274 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1020 | 1267 | IPR027417 | - | |
Aed6g2233 | 1274 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 710 | 996 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Aed6g2233 | 1274 | Gene3D | - | 370 | 623 | IPR027417 | - | |
Aed6g2233 | 1274 | CDD | ABC_MTABC3_MDL1_MDL2 | 1031 | 1265 | - | - | |
Aed6g2233 | 1274 | ProSitePatterns | ABC transporters family signature. | 511 | 525 | IPR017871 | GO:0005524 | |
Aed6g2233 | 1274 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 699 | 1014 | - | - | |
Aed6g2233 | 1274 | CDD | ABC_MTABC3_MDL1_MDL2 | 372 | 610 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed6g2233 | Aed-Chr6 | 24495401 | 24501368 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed6g2233 | 50 | 616 | Calmodulin-binding Proteins | AT2G36910 | 38.609 | 3.42e-113 | 383 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed6g2233 | K05658 | - | gmx:100800293 | 2202.94 |