Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2232 ATGTTTGTGGGGACTGTTGGTGCTATTGGAAATGGAATCTCCATGCCCTTAATGACTCTGATATTTGGAAATATGATCAATGCATTCGGAGGATCCAGTAACACCAGCGACATGGTTGATGAAGTTTCCAAGGTGTCTCTGCAATTTGTATACTTGGCTGTGGGTACCTTTTTTGTGTCACTGTTGCAGATGACATGCTGGATGATCACTGGGGAAAGACAAGCTGCAAGAATTAGAGGATTATACCTTCAAACAATTTTGAGGCAAGATGTCACTTTCTTTGATAAAGAGACTAATACTGGAGAGGTTGTTGGAAGGATGTCTGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAAAAGGTAGGACAGTTCATACAGTTAATAGCAACTTTCTTTGGAGGTTTTGTAGTAGCATTCATCAAGGGATGGCTTCTAACTGTTGTCATGTTATCCTGTATTCCACTTCTTGTCTTGTCTGGGGCTATGATGAGTCTGATTATTACAAAAACATCATCCAAAGGACAAGCTGCTTATTCTACAGCAGCAAGTGTAGTAGAGCAGACAATTGGTTCTATCCGAACTGTTGTATCATTCACTGGGGAGAGGCTGGCTATAGCTAAATACAATCAGTCCTTAATCGATGCATACAAGATGGGATTGCAAGAGGCATTAGCTTCTGGTTTGGGTTTTGGTGCTCTCTACTTTGTTATTTGCTGCACTTATGGTTTGGCTATATGGTTTGGTGCAAAAATGATATACGGGAAGGATACACAGGAGGAGAAGTTGTCTCTTGGGTCAGCATCTACAAGCTTGAGTGCTTTTGCTGCAGGTAAAGCTGCAGCCTTTAAGATGTTTGAAACAATCAAAAGGAAGCCGGAAATCGATGCCTATGACACTACTGGTCGGACACTTGAAGACATTCGCGGTGATATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCTGCTGAACTGATATTCAAGGAATTTTTGCTTTCAATACCAAGTGGCACTACTGCAGCTTTGGTAGGACAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTACGATCCACAGTCTGGTGCAGTACTTATTGATGGTATCACCCTCAGAGAATTTCAACTGAAATGGATTAGACACAAAATTGGCTTAGTCAGCCAGGAACCAGTACTCTTTACTTGCAGCATTAAAGAGAATATTGCCTATGGCAAGGATGGAGCAACTGATGAAGAAATCAGAGCTGCAGCAGAAGTTGCTAATGCTTTCAAATTTATAGATAAACTTCCTCAGGGTCTAGATACAATGGTTGGTGAGCATGGTACACAGCTCTCTGGGGGCCAAAAGCAGAGAGTGGCAATAGCAAGAGCAATTTTGAAAGATCCAAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAGTAATGATAAACAGAACAACCGTCATTGTAGCCCACCGATTGAGTACTATAAGGAATGCCGATACCATTGCTGTTATCCATCAAGGAAAAATAGTTGAAAGAGGTTCACACGCTGAGCTCACCAAGGATCCTGATGGATCCTATAGTCAGCTCATCAGACTACAAGAAATTAAGAAGTTAGAACAGAATATAGTGCATTCTGGAAGACATTCAAGTAATAGGTCTTCATTCTCAGTATCATTTGGCGTGCCCACATCTGTTGTTGGCTTCATAGAACCTGCAGGTGAAGGGCCTGAAGTTCCTCCTTCAACAGCTCCTTCACCACCAGAAGTGTCTCTTCATCACCTGGCTTATCTAAACAAGCCAGAAATTCCAGTGTTACTGGTGGGAACTGTATCTGCAGTGATAACTGGAGTAATATTTCCTGCTTTTGGTCTCTTACTTTCCAAAATGATAAGTACTTTCTATGAGCCAGCTCATGAACTTCGTAAAGATTCAAAAGTTATGGCATTAGTATTTGTTGCGCTTGGTGTGGTATCATTCTTGGTTTATCCGGCTAGGTTCTACCTTTTTGGTGTTGCTGGTGGTAAGTTGATCCAAAGGATCCGGAAAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTAAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCAAGGCTCTCCACTGATGCAGCTTCTGTAAGAGCTTTGGTTGGGGATGCACTTGGCTTGCTGGTTCAAAATATTGCTGCAGCAATAGCTGGCTTAGTAATTGCCTTTGAATCGAGCTGGCAGCTTGCTTTTATAATCCTTGCTTTGGTGCCTTTGCTAGGAGTAAATGGATATGTGCAATTCAAGGTCCTGAATGGATTCAGTAGAGATGCAAAGAAAGTGTATGAGGAAGCAAGTCAAGTGGCGAATGATGCTGTGGGGAGTATAAGAACGGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCAGGAAAAATGTGAAGGACCAATCAAGACAGGCATAAGGCGAGGGATAATAAGTGGAATTAGTTTTGGAGTGTCATTCTTTGTGCTGTATGCAGTTTATGCAACCAGTTTTTATGCCGGAGCTCGACTGGTAGAGGATGGCAAGTCTTCTTTCTCAGATGTTTTCCAGGTCTTTTTTGCTCTCAGTATGGCAGCTGTAGGAATCTCTCAATCTGGCTCTTTGGTCCCTGATTCAACTAAAGCAAAAGGTGCTGCTGCTTCCATATTTGCCATTCTTGACCAAAAGTCACAAAAAGGCCCAAGTGATGACTCTGGAATGACACTGGAAGAAGTCAAGGGAGAGATTGAACTTAAGCATGTCAGTTTCAAATATCCTACCAGACCCGATGTTCAAATATTCAGAGATCTTAGCTTGACCATTCATAGCGGCAAGACGGTAGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACGGTGATCTCATTATTACAAAGATTTTATGACCCAGACTCCGGTCACATTTCACTGGATGGTAAAGAAATCCAAAGGATGCAAGTTAAATGGCTGAGACAACAGATGAGCCTGGTGAGTCAAGAGCCTGTACTGTTTAATGACACCATCAGAGCCAATATTGCATATGGAAAAGGAGATGCAACTGAGGCAGAAATTATAGCCGCAGCAGAATTGGCAAATGCTCATAAGTTCATTAGTAGTTTGCAGAAGGGTTATGACACGTTAGTAGGGGAGCAAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGTGTGGCAATTGCACGAGCTATTGTGAAGAATCCAAAAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTAGACCGTGTTATGGTGGACCTAACCTCAATAGTAGTGGCTCATAGGCTATCAACTATAAAGGGTGCAGATTTAATTGCAGTAGTTAAAAATGGGGTGATAGCAGAGAAGGGAAAGCATCAAGCATTACTCAACAGGGGGGGTGACTATGCTTCCATAGTAGCGTTGCATACAAGTGTTTCTACATCTTAG 3555 0.4222 MFVGTVGAIGNGISMPLMTLIFGNMINAFGGSSNTSDMVDEVSKVSLQFVYLAVGTFFVSLLQMTCWMITGERQAARIRGLYLQTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLIATFFGGFVVAFIKGWLLTVVMLSCIPLLVLSGAMMSLIITKTSSKGQAAYSTAASVVEQTIGSIRTVVSFTGERLAIAKYNQSLIDAYKMGLQEALASGLGFGALYFVICCTYGLAIWFGAKMIYGKDTQEEKLSLGSASTSLSAFAAGKAAAFKMFETIKRKPEIDAYDTTGRTLEDIRGDIELREVCFSYPTRPAELIFKEFLLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQSGAVLIDGITLREFQLKWIRHKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAEVANAFKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRVMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHAELTKDPDGSYSQLIRLQEIKKLEQNIVHSGRHSSNRSSFSVSFGVPTSVVGFIEPAGEGPEVPPSTAPSPPEVSLHHLAYLNKPEIPVLLVGTVSAVITGVIFPAFGLLLSKMISTFYEPAHELRKDSKVMALVFVALGVVSFLVYPARFYLFGVAGGKLIQRIRKMCFEKVVHMEVSWFDEAEHSSGARLSTDAASVRALVGDALGLLVQNIAAAIAGLVIAFESSWQLAFIILALVPLLGVNGYVQFKVLNGFSRDAKKVYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKCEGPIKTGIRRGIISGISFGVSFFVLYAVYATSFYAGARLVEDGKSSFSDVFQVFFALSMAAVGISQSGSLVPDSTKAKGAAASIFAILDQKSQKGPSDDSGMTLEEVKGEIELKHVSFKYPTRPDVQIFRDLSLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHISLDGKEIQRMQVKWLRQQMSLVSQEPVLFNDTIRANIAYGKGDATEAEIIAAAELANAHKFISSLQKGYDTLVGEQGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDLTSIVVAHRLSTIKGADLIAVVKNGVIAEKGKHQALLNRGGDYASIVALHTSVSTS 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2232 1184 SMART AAA_5 968 1160 IPR003593 -
Aed6g2232 1184 SMART AAA_5 339 525 IPR003593 -
Aed6g2232 1184 Pfam ABC transporter 960 1108 IPR003439 GO:0005524
Aed6g2232 1184 CDD ABC_MTABC3_MDL1_MDL2 941 1175 - -
Aed6g2232 1184 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 253 - -
Aed6g2232 1184 CDD ABC_MTABC3_MDL1_MDL2 312 550 - -
Aed6g2232 1184 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 1 1180 - -
Aed6g2232 1184 ProSitePatterns ABC transporters family signature. 1080 1094 IPR017871 GO:0005524
Aed6g2232 1184 SUPERFAMILY ABC transporter transmembrane region 1 275 IPR036640 GO:0005524|GO:0016021
Aed6g2232 1184 CDD ABC_6TM_Pgp_ABCB1_D2_like 612 923 - -
Aed6g2232 1184 Gene3D - 931 1179 IPR027417 -
Aed6g2232 1184 Gene3D - 302 551 IPR027417 -
Aed6g2232 1184 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 941 1177 IPR003439 GO:0005524
Aed6g2232 1184 Pfam ABC transporter 333 479 IPR003439 GO:0005524
Aed6g2232 1184 ProSitePatterns ABC transporters family signature. 451 465 IPR017871 GO:0005524
Aed6g2232 1184 Gene3D ABC transporter type 1, transmembrane domain 908 1182 IPR036640 GO:0005524|GO:0016021
Aed6g2232 1184 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 623 906 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g2232 1184 Gene3D ABC transporter type 1, transmembrane domain 1 907 IPR036640 GO:0005524|GO:0016021
Aed6g2232 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 550 IPR027417 -
Aed6g2232 1184 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 2 275 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g2232 1184 SUPERFAMILY ABC transporter transmembrane region 611 921 IPR036640 GO:0005524|GO:0016021
Aed6g2232 1184 Pfam ABC transporter transmembrane region 622 890 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g2232 1184 Pfam ABC transporter transmembrane region 1 267 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g2232 1184 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 312 548 IPR003439 GO:0005524
Aed6g2232 1184 PANTHER - 1 1180 - -
Aed6g2232 1184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 930 1176 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2232 Aed-Chr6 24487222 24492728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2232 1 1181 Calmodulin-binding Proteins AT2G36910 44.715 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2232 K05658 - gmx:100800293 1956.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2232 6 24487222 24492728 Aed6g2232 6 24487222 24492728 ECH