Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2228 ATGGCCAGGCAGCAATATTCCAAGGAGAAGAAGGATGGAAGCAACAAAACAGTACCCTTTTACAAACTTTTTTCATTTGCAGACTCTTGGGATTATCTACTGATGTTTGTGGGGACCATAAGTGCTGCTGGGAATGGAATAACTAAGGCTTCAACGAATATAGTTATGGGAGAAGCAATTGAAGTTTTTAGAACAAATGGCCACACTAAACAAGTAGTTCATGAAATTTCCAAGGTGTCTCTGAAGTTTGCACTACTAGGTGCAGCTTCCTTTCTGGCAGCATTTCTACAGGTGGCTTGTTGGGTGTCCACTGGGGAGAGACAAGCAGCGAGAATTCGAGGCTTATACCTCAAAGCAGTTCTGAGGCAAGATATCAGCTTCTTTGACAAGGAAACCAGTACTGGTGAGGTTGTTGAAAGGATGTCAGGTGACACAATTCTCATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAGTTCACACAGTGTGTGGCATGTTTTTTAGGAGGTTTAGTCATAGCATTCATCAAGGGTTGGTTTCTAACCCTTGTCCTTCTATCTTGTATTCCACCTCTTGTCCTCTCTGGTTCCATCATGAGCTATGCTTTTGCAAAGTTGGCATCCCGTGGACAAGCAGCTTATTATGAAGCAGCAACTGTAGTAGATCGCACAATTGGTTCAATTCGAACTGTTGCATCTTTTACAGGCGAGAACCAAGCTATAGCTGAATACAATCAATCCTTAATCAAAGCTTACCGGACTGCAGTGCAAGATGGAGTGGCTGCTGGTTTCGGCCTGGGCTCAATGCGTTTCTTTATTACAAGCAGTTTTGCGTTGGCTTTATGGTTTGGAGCGAAGATGGTATTAGAGAAAGGCTATACAGCAGGTCAAGTCATGAGTATATTTCTGGCACTATTTTATGCCTCCATGTCTTTGGGGCAGGTTTCTGTAAATTTGACAGCATTTGCTGCAGGACAGGCTGCCGCCGTTAAAATATTTGAAACAATAAATAGGCAGCCACATATTGATGCTTACGACTCTGCTGGTCGACAGGTAGATGATATTTCTGGAGATATAGAGCTTAGGGAGATCTGCTTTAGTTATCCTTCAAGACCAGATGCATTGATATTCAATGAACTTTCAATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTTGGGAAAAGTGGGAGTGGGAAATCAACAGTTATTGGTTTGATTGAGAGATTTTATGATCCACAAGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAGAGAGTTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTTCTCTTCAACTGTAGCATTAAAGAAAATATTGCCTATGGTAAGGATGGTGCAACAGATGAAGAAATCAGAGCTGCCACTGAACTTGCTAATGCAGCTAAATTCATAGATAAATTTCCCCATGGACTTGACACGAGAGTTGGTGAGCATGGTACACAGCTATCTGGGGGTCAAAAGCAAAGAATTGCCATAGCAAGGGCGATTCTGAAAGATCCAAAAATTCTACTACTTGATGAAGCTACTAGTGCCCTTGATGCAGAGTCTGAGAGAGTGGTGCAAGAGACACTAGACAAAATTATGATAAACCGAACAACTGTCATTGTAGCACACCGCCTAAACACAATAAGGAATGCTGATACCATTGCCGTTATTCATCAGGGAAGAGTAGTAGAAAATGGCACGCATGCTGAGCTCATTGAAGATTCAGATGGAGCTTATAGCTTGCTCATTAGATTGCAAGAAATTAACAGGCAGTCAGATGGTACAAATGACTCAGGAAGGCTAGAAAACTCTGTAGATTCTGAACAACAATCAAGCGAACGGTTTCCTTTCCCTCAATCTTTAAGCTTGGGATCATCTGGAGGAGGAAACAGAATATCAAATGCTACGCCTACTACTCTTGATCTCTTAAAAACATCAGAAGTTCTTCCTCCAGAGGTATCACATTCACCTACAGAAGTCTCATTCCTTCACCTTGCTTATCTTAACAAGCCTGAAATCTCAGAGTTAGTCCTAGGGACACTAGCAGCCACAGTAACTGGGGCAATACTACCGCTTATGGGGTTTCTTATCTCCAACATGATAAATACCTTCCTTGGGCCTGCAGATGAACTCCGTAAAGACTCAAAGTTTTGGGCATTAATATTTATTGCCCTTGGTGTAACTGGCTTCATATTTCAACCATTAAGGTCCTACTTTTTTGCTGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATTATTAACATGGAAGTAGGCTGGTTTGACAAATCTGAGACTTCGAGTGGAGTACTTGGAGCAAGGCTTTCAATCGATGTGGCCTCTATTCGAACTTTTGTTGGGGATGCACTTGGTTTGATGGTTCAAGATATTGCTACAGTAATCATAGGCTTGGTAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTTATCATTGTTGCTTTGCTACCTCTATTATTAGTAAATGGACAAGTGCAAATGGGGTCCATGCAAGGATTCGTCACTGATGCAAAGAAACTATATGAGGAAGCAAGTCAAATAGCGAATGAGGCTGTAGTGAATATTAGAACAGTGGCCGCTTTTTGCGCAGAAGAGAAAGTGGTGGAGTTATACCAGAAGAAATGTTTAGGACCCATCCAGACAGGTATAAAGCAAGGTTTAGTCAGCGGAACAAGTTTTGGGTTATCACTCTTCTTGGTGTTCTCAGTTAATGCATGCAGTTTTTATGCTGGAGCCCGACTTGTTGAGAATGGCAAAACATCAATCTCAGATGTTTTCCGTGTGTTTTTCACTCTCACAATGGCAGCTATAGCGATTTCACAATCTGGCTTCATGGCCCCAGGTGCAAGCAAAGCAAAAAGTTCTGTTGCTTCTATATTTGCTATTCTTGACCAGAAATCAAGAATAGATCCCAGTGATGAGACCGGAATGACATTGCAAGAAGTGAAGGGAGAAATTGAGTTCCACCATGTCACTTTCAAGTATCCAACCAGGCCTAATGTTCTTGTATTCAGGGAACTTTTCTTGACCATTCATGCTGGAGAGACAGTTGCTCTAGCAGGGGAAAGTGGAAGTGGAAAGTCAACAGTGATTTCATTGTTGCAAAGATTTTATGAGCCAGATTCAGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCAGTGTTGTTCAATGACACCATCAGAGCCAACATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTGTAGCTGCAGCAGAACTGGCAAATGCCCACAACTTCATTAGCAGTTTGCAGCAGGGTTATGAGACTGTAGTGGGGGAGAGAGGGATTCAATTGTCTGGAGGGCAGAAGCAGAGGGTAGCAATTGCAAGAGCCATAGTGAAGAGTCCAAAAATACTACTGCTAGATGAAGCCACGAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGACCGAGTGATGGTGGATAGAACCACAGTTGTGGTGGCTCACAGGTTAACCACCATTAAGGATGCAGATTCAATTGCGGTGGTTCAAAATGGAGTGATTGCTGAGCAAGGAAAACATGACACTTTGTTTAACATGGGTGGTATCTATGCTTCATTAGTAGGCTTGCACACAAATCTTGCTTCATCTTAG 3759 0.4246 MARQQYSKEKKDGSNKTVPFYKLFSFADSWDYLLMFVGTISAAGNGITKASTNIVMGEAIEVFRTNGHTKQVVHEISKVSLKFALLGAASFLAAFLQVACWVSTGERQAARIRGLYLKAVLRQDISFFDKETSTGEVVERMSGDTILIQEAMGEKVGKFTQCVACFLGGLVIAFIKGWFLTLVLLSCIPPLVLSGSIMSYAFAKLASRGQAAYYEAATVVDRTIGSIRTVASFTGENQAIAEYNQSLIKAYRTAVQDGVAAGFGLGSMRFFITSSFALALWFGAKMVLEKGYTAGQVMSIFLALFYASMSLGQVSVNLTAFAAGQAAAVKIFETINRQPHIDAYDSAGRQVDDISGDIELREICFSYPSRPDALIFNELSISISSGTTAALVGKSGSGKSTVIGLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFNCSIKENIAYGKDGATDEEIRAATELANAAKFIDKFPHGLDTRVGEHGTQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQETLDKIMINRTTVIVAHRLNTIRNADTIAVIHQGRVVENGTHAELIEDSDGAYSLLIRLQEINRQSDGTNDSGRLENSVDSEQQSSERFPFPQSLSLGSSGGGNRISNATPTTLDLLKTSEVLPPEVSHSPTEVSFLHLAYLNKPEISELVLGTLAATVTGAILPLMGFLISNMINTFLGPADELRKDSKFWALIFIALGVTGFIFQPLRSYFFAVAGSKLIKRIRLMCFEKIINMEVGWFDKSETSSGVLGARLSIDVASIRTFVGDALGLMVQDIATVIIGLVIAFEANWQLSLIIVALLPLLLVNGQVQMGSMQGFVTDAKKLYEEASQIANEAVVNIRTVAAFCAEEKVVELYQKKCLGPIQTGIKQGLVSGTSFGLSLFLVFSVNACSFYAGARLVENGKTSISDVFRVFFTLTMAAIAISQSGFMAPGASKAKSSVASIFAILDQKSRIDPSDETGMTLQEVKGEIEFHHVTFKYPTRPNVLVFRELFLTIHAGETVALAGESGSGKSTVISLLQRFYEPDSGQITLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIVAAAELANAHNFISSLQQGYETVVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVMVDRTTVVVAHRLTTIKDADSIAVVQNGVIAEQGKHDTLFNMGGIYASLVGLHTNLASS 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2228 1252 Pfam ABC transporter 1029 1176 IPR003439 GO:0005524
Aed6g2228 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1008 1245 IPR003439 GO:0005524
Aed6g2228 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g2228 1252 Gene3D - 356 614 IPR027417 -
Aed6g2228 1252 Pfam ABC transporter transmembrane region 35 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g2228 1252 Pfam ABC transporter transmembrane region 686 958 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g2228 1252 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524
Aed6g2228 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 596 IPR027417 -
Aed6g2228 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Aed6g2228 1252 Gene3D - 998 1250 IPR027417 -
Aed6g2228 1252 MobiDBLite consensus disorder prediction 602 646 - -
Aed6g2228 1252 CDD ABC_MTABC3_MDL1_MDL2 358 596 - -
Aed6g2228 1252 SMART AAA_5 385 571 IPR003593 -
Aed6g2228 1252 SMART AAA_5 1035 1228 IPR003593 -
Aed6g2228 1252 Pfam ABC transporter 377 525 IPR003439 GO:0005524
Aed6g2228 1252 CDD ABC_6TM_Pgp_ABCB1_D1_like 35 319 - -
Aed6g2228 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 323 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed6g2228 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1245 IPR027417 -
Aed6g2228 1252 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524
Aed6g2228 1252 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 12 1249 IPR039421 -
Aed6g2228 1252 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 991 - -
Aed6g2228 1252 Gene3D ABC transporter type 1, transmembrane domain 82 981 IPR036640 GO:0005524|GO:0016021
Aed6g2228 1252 SUPERFAMILY ABC transporter transmembrane region 677 992 IPR036640 GO:0005524|GO:0016021
Aed6g2228 1252 SUPERFAMILY ABC transporter transmembrane region 22 342 IPR036640 GO:0005524|GO:0016021
Aed6g2228 1252 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 12 1249 - -
Aed6g2228 1252 CDD ABC_MTABC3_MDL1_MDL2 1008 1243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2228 Aed-Chr6 24445672 24451131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2228 8 1246 Calmodulin-binding Proteins AT2G36910 40.960 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2228 K05658 - gmx:100818527 2114.35