Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2225 ATGGAAGTGGAGGACGACTGGGATTTGAGCGCAGAGGACCTCGATTCTCTCGAAAGAGACGCTTTTCAGAAAATTGCTCAACTGCGCAACTCTCCTCCTCTTCCTCCTTCTTCTTCAACTGCAACAACCAACCACTTCCCACCAAAATCCATTCCCGATTCGCGTCCCCAAACTGTTGGTGCTTTGCCTCAGGGAGCATTGCCCACGTCATTGAAATCAGATAAACATTCTAAAGAGCTGCCAAAGTTTTCGGTCAGACTTTTTCTTCATTCCAGTGGAAATGTTGCAGCAAAGTTTCAATATGACCAGGTAGTAATTTCTGCTTTTCGAAAAATCCCTAGATCTTCTTGGAATGCAAAAGAACGGTTATGGATATTCCCACTATCTTCCTTGTCAGAAGCGGAAAAGGTTCTTGGAGAAATACCTGGTTATAATGTTCAGGTGGAAAACTTAGATCCCTTAGTGCAACGATCCATTGCTGCAGCGTCTGCAGTTTCAGATCTTCAAGTGGAAGATGCAAAACAACACATAAGAGGGAGGCAGGCCATTGCTGTAGCTTCATGCATTCAGGACTCGTGGCCTGTTCTCATAATTGCACCATCTTCATTACGCTTGCAATGGGCTTCTGTAAGGGTTGCTTTTCTACATTTTTCATCATTTAATAGCACACACATTTGGGGAGGTTTCAATATAGTATCTCCAAGTGCCAAAAGCAGCATTCGTCTGGATGGACTATTCAACATTATCTCGTACGATTTGGTGCCAAAGCTACAGAATATGCTCATGACATGTGACTTTAAGGTTGTGATTGCTGATGAATCGCATTATCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAGGAATGTTCATGAATATGGTAACCGGTACTGCAAGGGTGGTTTTTTTGGACTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAACTTGATGAAGGCAACAGTGATGATTCGAAGGCTTAAAAATGATGTTCTTTCTGAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGATTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTGTTTCGAGAGTTGGAGATGGTAAAAGCCAAAATTAAGTCAGCTAAATCACAAGAGGAGGCTGAATCACTCAAGTTTGCTCAAAAGAATCTTATAAACAAGATATATACCGATTCTGCAGAAGCTAAGATTCCATCTATTCTTGATTATGTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGGCAATGATTGATTCAATACACGAGTTTCTTCTTAAGAAAAAAGTTGGTTGCATCCGGATTGATGGAGGTACACCTGCTGCATCCAGGCAACAATTGGTAACAGAGTTTCAGCAAAAAGATTCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGTGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCCGAATTGTCTTGGACTCCTGGTGACCTAATTCAGGCTGAAGACCGTGTTCATAGAATTGGCCAGATGTCTTCAGTAAATATATACTACTTGCTAGCAAATGACACCGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGACAATTTGGGGCAGATGTTAGACGGCCATGAGAATGCCTTGGAGGTCTCAGCTCTGCCGATTAATAGTCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGATCTGACAACAAGGATAGTTTAGTGAATAGCCCTTCAAAGCAAAATCAGAAAACTCTAGACCAGTTTGTTAGAAGATGTGATAACATGGATAGGTTGGAATATGAGCCCAACCCCAAACGTCCCCGAAACTGA 1977 0.4178 MEVEDDWDLSAEDLDSLERDAFQKIAQLRNSPPLPPSSSTATTNHFPPKSIPDSRPQTVGALPQGALPTSLKSDKHSKELPKFSVRLFLHSSGNVAAKFQYDQVVISAFRKIPRSSWNAKERLWIFPLSSLSEAEKVLGEIPGYNVQVENLDPLVQRSIAAASAVSDLQVEDAKQHIRGRQAIAVASCIQDSWPVLIIAPSSLRLQWASVRVAFLHFSSFNSTHIWGGFNIVSPSAKSSIRLDGLFNIISYDLVPKLQNMLMTCDFKVVIADESHYLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGFFGLYQGASNHEELHNLMKATVMIRRLKNDVLSELPVKRRQQVFLDLADKDMKQINALFRELEMVKAKIKSAKSQEEAESLKFAQKNLINKIYTDSAEAKIPSILDYVGTVIEAGCKFLIFAHHQAMIDSIHEFLLKKKVGCIRIDGGTPAASRQQLVTEFQQKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQMSSVNIYYLLANDTVDDIIWDVVQSKLDNLGQMLDGHENALEVSALPINSPSKQKTLDQFVRRSDNKDSLVNSPSKQNQKTLDQFVRRCDNMDRLEYEPNPKRPRN 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2225 658 SMART helicmild6 468 551 IPR001650 -
Aed6g2225 658 Gene3D - 179 390 IPR038718 -
Aed6g2225 658 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 442 594 IPR001650 -
Aed6g2225 658 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 323 IPR014001 -
Aed6g2225 658 ProSiteProfiles HARP domain profile. 79 153 IPR010003 -
Aed6g2225 658 Coils Coil 394 414 - -
Aed6g2225 658 Gene3D - 400 644 IPR027417 -
Aed6g2225 658 MobiDBLite consensus disorder prediction 21 75 - -
Aed6g2225 658 Pfam Helicase conserved C-terminal domain 450 551 IPR001650 -
Aed6g2225 658 CDD SF2_C_SNF 438 562 - -
Aed6g2225 658 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 181 629 IPR030101 GO:0006281|GO:0031297|GO:0036310
Aed6g2225 658 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 3 169 IPR030101 GO:0006281|GO:0031297|GO:0036310
Aed6g2225 658 MobiDBLite consensus disorder prediction 30 51 - -
Aed6g2225 658 Pfam SNF2-related domain 192 421 IPR000330 GO:0005524|GO:0140658
Aed6g2225 658 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 181 629 - -
Aed6g2225 658 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 3 169 - -
Aed6g2225 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 376 IPR027417 -
Aed6g2225 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 594 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2225 Aed-Chr6 24426222 24434830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2225 408 593 RAD5 or RAD16-like Gene Family AT1G02670 28.272 2.48e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed6g2225 SNF2_N 5.8e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2225 K14440 - gmx:100778246 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2225 6 24426222 24434830 Aed10g1709 10 21737282 21738253 PCT