Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2215 ATGGGAACATTAGAACAAATTGATGCTACTCCTCAAACCCAGTCATCATCTTCTTCATCTTCTTCCATTGATAGCAACAACCACCCTTCTAGGACAAGGACTAGGACTACTCCACCACCACCACCCTCTTCCCCTTCATCAAGTGCCTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTTAGCATCTCTCCTTCTTCTCAATCTGAATTACCCTTCAATTCAACACCAAGGGAGGAAAGTTTTGACTGGCCACCAATTAAATCCATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTGAGCCAAAGACCCTCTTTATTTGTCAAAGTCTACATGGAAGGCATCCCCATAGGAAGAAAATTGAATCTGATGGCACATTATAGCTATGATGGACTTGTGAAAACTCTTGGCCATATGTTTAGGACCACCATTCTGTGTCCTAACTCTCAACCAGTTAATTCTGGGAATTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAGATGTTCTTGAACAGTGTGAAGAGGCTGAAGATCACAAGAGCTGACAGATGCTAG 603 0.4428 MGTLEQIDATPQTQSSSSSSSSIDSNNHPSRTRTRTTPPPPPSSPSSSACRNRTDLSTDLRLGLSISPSSQSELPFNSTPREESFDWPPIKSILRSTLVGKQSHLSQRPSLFVKVYMEGIPIGRKLNLMAHYSYDGLVKTLGHMFRTTILCPNSQPVNSGNFHVLTYEDQEGDWMMVGDVPWEMFLNSVKRLKITRADRC 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2215 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 17 200 - -
Aed6g2215 200 SUPERFAMILY CAD & PB1 domains 103 194 - -
Aed6g2215 200 MobiDBLite consensus disorder prediction 1 85 - -
Aed6g2215 200 MobiDBLite consensus disorder prediction 47 79 - -
Aed6g2215 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 200 IPR003311 GO:0005634|GO:0006355
Aed6g2215 200 MobiDBLite consensus disorder prediction 1 33 - -
Aed6g2215 200 Pfam AUX/IAA family 75 196 IPR033389 -
Aed6g2215 200 Gene3D - 104 200 - -
Aed6g2215 200 ProSiteProfiles PB1 domain profile. 110 199 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2215 Aed-Chr6 24357251 24359511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2215 114 194 B3 DNA Binding Superfamily AT4G23980 37.037 7.34e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed6g2215 AUX_IAA 1.4e-32 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2215 K14484 - gmx:100818083 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2215 6 24357251 24359511 Aed6g2215 6 24357251 24359511 ECH