Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2203 ATGGGTTTCTACGCTGAAGACCCTCTCTCCGGCTTGACAATAGGGCAGGCCATATACGAAGTAGCTCTCATCATTGCAGTTCTGAGATGGGTCCTGTGTTTAGTCTTTAGAATGATCAACGACAGAACAACACAATCCGACGAGACCTCACCAGCAGAGCAGACGACAAGGGACAAGTACAACAACCCTCTGGTGCTGACCACGTTCGGGGAGATTAAGGAGAGGCTTCCGCAGACGACGGAGGAGGACACGTGCGCCGTGTGCCTGAGCCAGCTGAGCGTGCAGGACGAGGTTAGAGAGCTCATGAACTGCTGCCACGTGTTCCACAGAGAGTGCATAGACAGATGGTTGGAGCACGAGCAGGAGTACGAGAATCACAGCCCCACGTGTCCTCTCTGCAGGGCTCCGTTGCTTAGTTCTTGCTCTGCCACGTGTCTGCCTCCTCCTCCTCAGCCTAGTTGGGCTGTGGAGAGACTCCTCTATCTCTTTGGGGATGATCTCTTGCCTTGTTAG 513 0.5439 MGFYAEDPLSGLTIGQAIYEVALIIAVLRWVLCLVFRMINDRTTQSDETSPAEQTTRDKYNNPLVLTTFGEIKERLPQTTEEDTCAVCLSQLSVQDEVRELMNCCHVFHRECIDRWLEHEQEYENHSPTCPLCRAPLLSSCSATCLPPPPQPSWAVERLLYLFGDDLLPC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2203 170 ProSiteProfiles Zinc finger RING-type profile. 85 134 IPR001841 -
Aed6g2203 170 SMART ring_2 85 133 IPR001841 -
Aed6g2203 170 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 169 - -
Aed6g2203 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 169 - -
Aed6g2203 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 139 IPR013083 -
Aed6g2203 170 SUPERFAMILY RING/U-box 79 140 - -
Aed6g2203 170 Pfam Ring finger domain 83 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2203 Aed-Chr6 24288928 24289440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2203 1 167 C3H Transcription Factor Family AT5G20885 47.753 5.05e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2203 K16281 - gmx:111138523 278.87