Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2197 ATGTCTCTCGTCCACTCTGCATGCAAAGAAAACAACGTTAAAGTTGTAAAAAGAAATATCAAAGGACTAACCTCCCTTGGATCTCTTTCTACCTCTCTTCTCCGCAACTTAGTTTCATTTGAAACTAAGGCAGAGAGAGATTTCCTCTGCCTTAGAGAAACAACAACTCTCAAAATGGCGTTTCAGGACTTTGACCTCATCTCAGAGCGGCGAAGGAACGAGAAGAAACAAAAGATGCGGAAGAGGATCATGATCGGCGTGGCCACTTCCGTTGTCCTCATTGCCATGGTAGGCGCCGTTCTCTTCGTCGTCGTTAAAAACGACGACGCTGGCGATAACAAAGGCAAAACCAGCAACAGCAACAAGTCACATAATACCCATGAAGCACATGAACCATTATCATCATCATCACCATCATCATCTTCACCATCTTCCGAGCCCAAGGAAACTGTGGCACATTCTGAGAAGCTGGTGACATTGGTGTGCAGCTCCGCAGATTACAAGGAGAAATGTGAAGAACCTCTTAACAAGGCGATGGAGAATGACACCAAAATCACAGAACCAAAAGACCTTCTCAAGGCATACGTAATGTTTGTTGAGGATGAGGTTAGCAAGGCCTTCGACAAAACCTCCTCCATGAAGTTTGAAACTGAGGAAGAGAAAGGAGCCTTTGAGGATTGCAAGAAGCTCTTCGAGGATGCGAAGGAGGACATTGCAACCTCCATCTCCGAACTTGGGAATGCCGCGATGAAGAATATTTCTGAGAGGACTCCTGATCTCAACAGCTGGCTCAGTGCTGTCATCTCCTTCCAACAGAATTGCATTGATGGCTTTCCCGAGGGAAATAAAAGGACCGAGCTTCAGACTCTCTTCAACGATTCCAAGGAATTCGTTAGCAACTCCCTTGCCATTCTGTCTCAGGTGGCATCGGCTGTTTCTTCAATCCAGTCAACACTTGCAGAAGCAGCAACAGCAGCAGGACACGGCCGTTCCTTGCTATCTGATGATAATAACTCCAACTCCCCACTTTCTTCTCTCGACCCAACTGATGGCCTTCCTTCTTGGATGAACCATGAGGACCGAAGGGTCTTGAAGGCTATGGATAACAAACCTACACCTAATGTCACTGTCGCTAAAGATGGCAGTGGAGACTTCAAAACCATCACCGAATGTTTAAATGCTGTCCCTCAAAAATTTGAAGGACGGTATGTGATCTTTGTCAAAGAAGGAATATACGACGAGACAGTGATAGTAACGAAGAAAATGCAAAATATAACCATTTATGGTGATGGATCCCAAAAGAGCATCGTCACTGGCAACAAGAACTTCAGGGACGGTGTCAGGACTTTCCTAACTGCAACTTTTGCGGTAGAGGGAGAGGGATTCATAGGCATGGCAATGGGATTCAGAAACACTGCAGGACCTGATGGACACCAGGCAGTGGCTGCAAGAGTGCAGGCAGATCGTGCAGTGTTTGCCAACTGTCGGTTTGAGGGGTACCAAGACACACTATACACCCAAGCCCACAGACAATTCTACAGGAGCTGCATCGTTACAGGAACAATCGACTTCATCTTTGGGGACGCAGCCGTGGTGTTCCAGAACTGCATCTTGACTGTTAGGAAGCCAATGGATAACCAGCAGAACTTGGTGACAGCTCAAGGGAGAATGGACAAGCAACAGACAACTGGAATTGTGCTGCAGAAGTGCACAATCAAACCTGATGACTCACTTGTCCCAGAGAAGGACAAGATCAAGAGCTACCTTGGGAGGCCATGGAAGGAGTTCTCAAGAACCATTGTCATAGAATCAGAAATAGGTGACTTCATTCACCCTGATGGGTGGGCACCTTGGCAGGGAGACTTTGCTCTCAAGACATTGTACTATGCTGAGTATGGCAACACAGGACCTGGTGCCAGCACCAGTGCTAGGGTCAAGTGGCCTGGTTACAAAGTCATTAACAAGGATGAGGCTGCACAGTTCACTGTCAGCTCTTTCTTGACAGGCTCATGGATCCAGAATACTGGCGTCCCCGCCACGCAAGGCTTGTACAACAATTGA 2061 0.4716 MSLVHSACKENNVKVVKRNIKGLTSLGSLSTSLLRNLVSFETKAERDFLCLRETTTLKMAFQDFDLISERRRNEKKQKMRKRIMIGVATSVVLIAMVGAVLFVVVKNDDAGDNKGKTSNSNKSHNTHEAHEPLSSSSPSSSSPSSEPKETVAHSEKLVTLVCSSADYKEKCEEPLNKAMENDTKITEPKDLLKAYVMFVEDEVSKAFDKTSSMKFETEEEKGAFEDCKKLFEDAKEDIATSISELGNAAMKNISERTPDLNSWLSAVISFQQNCIDGFPEGNKRTELQTLFNDSKEFVSNSLAILSQVASAVSSIQSTLAEAATAAGHGRSLLSDDNNSNSPLSSLDPTDGLPSWMNHEDRRVLKAMDNKPTPNVTVAKDGSGDFKTITECLNAVPQKFEGRYVIFVKEGIYDETVIVTKKMQNITIYGDGSQKSIVTGNKNFRDGVRTFLTATFAVEGEGFIGMAMGFRNTAGPDGHQAVAARVQADRAVFANCRFEGYQDTLYTQAHRQFYRSCIVTGTIDFIFGDAAVVFQNCILTVRKPMDNQQNLVTAQGRMDKQQTTGIVLQKCTIKPDDSLVPEKDKIKSYLGRPWKEFSRTIVIESEIGDFIHPDGWAPWQGDFALKTLYYAEYGNTGPGASTSARVKWPGYKVINKDEAAQFTVSSFLTGSWIQNTGVPATQGLYNN 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2197 686 MobiDBLite consensus disorder prediction 112 153 - -
Aed6g2197 686 PANTHER PECTINESTERASE 72 683 - -
Aed6g2197 686 MobiDBLite consensus disorder prediction 130 148 - -
Aed6g2197 686 PANTHER PECTINESTERASE 72 683 - -
Aed6g2197 686 TIGRFAM PME_inhib: pectinesterase inhibitor domain 139 308 IPR006501 GO:0004857
Aed6g2197 686 SMART PMEI_2 153 304 IPR006501 GO:0004857
Aed6g2197 686 MobiDBLite consensus disorder prediction 112 129 - -
Aed6g2197 686 Gene3D - 368 683 IPR012334 -
Aed6g2197 686 MobiDBLite consensus disorder prediction 331 351 - -
Aed6g2197 686 SUPERFAMILY Pectin lyase-like 372 682 IPR011050 -
Aed6g2197 686 ProSitePatterns Pectinesterase signature 2. 518 527 IPR033131 -
Aed6g2197 686 CDD PMEI-like_3 160 310 - -
Aed6g2197 686 Pfam Plant invertase/pectin methylesterase inhibitor 157 304 IPR006501 GO:0004857
Aed6g2197 686 Gene3D Invertase/pectin methylesterase inhibitor family protein 154 311 IPR035513 -
Aed6g2197 686 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 156 307 IPR035513 -
Aed6g2197 686 MobiDBLite consensus disorder prediction 331 354 - -
Aed6g2197 686 Pfam Pectinesterase 374 669 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2197 Aed-Chr6 24235714 24238262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2197 59 685 Carbohydrate Esterase AT4G33230 48.967 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2197 - - gmx:100784679 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2197 6 24235714 24238262 Aed6g2197 6 24235714 24238262 ECH
Aed6g2197 6 24235714 24238262 Aed4g1005 4 9215577 9218206 PCT