Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2173 ATGGCAGCCTCTCAGCTCACTGCATCATTGAGGAACTTGCCTGCATTTGAAAGGTTTCAACCTTCAACGCTTCGATTTCCTTCTGTTGGGCACGTCAGAATTGGCACACTCACACAAACCTCGTTTCCCTCTTTCGTTGTCAGAGCCGCCACTGTTGTCGCCCCCAAGCACACCACTGTTAAGCCTGTGGGTGATAGAGTACTGGTGAAAATTAAGGATGCAGAGGAGAAGACTGCAGGTGGGATTTTGCTGCCAGCAGCTGCTCAAGGCAAGTCTCAAGGGGGTGAAGTGGTTGCTGTTGGAGAAGGGAAGTCGGTTGGGAAGACCAAAGTGGATGTTAGTGTCAAGACAGGTGCACAAGTTTTGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCAAAACATCTTATACTCAAGGACGATGACATCATTGGTATCCTTGAAACTGATGAGGTCAAGGATCTTAAACCCTTGAACGATAGAGTCTTGATAAAGGTTGCAGATGCTGAGGAAAAAACTGCTGGAGGTTTTTTGCTCACAGAGGCAACCAAGGAGAAACCATCTGTTGGGACTGTGATAGCGGTTGGTCCGGGGCATCTGGATGAGGAAGGTAATAGAAAGCCATTGTCCGCCACGCCTGGGAATACAGTTCTGTACTCCAAATATGCGGGGAATGACTTCAAGGGAAAAGATAGTTCTAACTACATTGTCTTGAGGGCCTCAGATGTCATGGCTATCCTGTCCTAG 756 0.4775 MAASQLTASLRNLPAFERFQPSTLRFPSVGHVRIGTLTQTSFPSFVVRAATVVAPKHTTVKPVGDRVLVKIKDAEEKTAGGILLPAAAQGKSQGGEVVAVGEGKSVGKTKVDVSVKTGAQVLYSKYAGTEVEFNGSKHLILKDDDIIGILETDEVKDLKPLNDRVLIKVADAEEKTAGGFLLTEATKEKPSVGTVIAVGPGHLDEEGNRKPLSATPGNTVLYSKYAGNDFKGKDSSNYIVLRASDVMAILS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2173 251 Pfam Chaperonin 10 Kd subunit 158 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed6g2173 251 Pfam Chaperonin 10 Kd subunit 60 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed6g2173 251 PANTHER GROES CHAPERONIN 1 251 - -
Aed6g2173 251 PIRSF Cpn21 1 251 IPR017416 GO:0006457|GO:0046914|GO:1901671
Aed6g2173 251 Hamap Co-chaperonin GroES [groES]. 59 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed6g2173 251 SUPERFAMILY GroES-like 58 151 IPR011032 -
Aed6g2173 251 CDD cpn10 158 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed6g2173 251 ProSitePatterns Chaperonins cpn10 signature. 158 182 IPR018369 GO:0005524|GO:0006457
Aed6g2173 251 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed6g2173 251 Hamap Co-chaperonin GroES [groES]. 157 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed6g2173 251 PRINTS 10kDa chaperonin signature 180 201 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed6g2173 251 PRINTS 10kDa chaperonin signature 237 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed6g2173 251 PRINTS 10kDa chaperonin signature 158 173 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed6g2173 251 PRINTS 10kDa chaperonin signature 215 227 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed6g2173 251 CDD cpn10 59 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed6g2173 251 SMART Cpn10_2 59 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed6g2173 251 SMART Cpn10_2 157 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed6g2173 251 Gene3D GroES chaperonin 153 251 IPR037124 GO:0006457
Aed6g2173 251 Gene3D GroES chaperonin 53 152 IPR037124 GO:0006457
Aed6g2173 251 SUPERFAMILY GroES-like 157 250 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2173 Aed-Chr6 24038756 24042664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2173 1 251 Calmodulin-binding Proteins AT5G20720 69.922 7.65e-127 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2173 K04078 - gmx:100804915 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2173 6 24038756 24042664 Aed6g2173 6 24038756 24042664 ECH
Aed6g2173 6 24038756 24042664 Aed4g0978 4 8958835 8961649 PCT