Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2172 ATGATGGTGAAGCCTAGAAGCAGCGAAAAGCCAGAGGAGGAGCATAGCGATTCCAAGTACAAAGGAGTCCGAAAGAGAAAATGGGGCAAATGGGTATCTGAAATAAGACTTCCCAACAGTCGTCAGAGGATTTGGTTGGGTTCCTACGACACTGCCGAGAAAGCCGCACGTGCCTTCGACGCGGCAATGTTTTGCTTACGTGGCCGCAACGCCAAGTTCAATTTCCCCGACAACCCCCCCGACATCGCCGCTGGGGAGTCCATGACCCCGTCGCAAATTCGGGCCGCCGCCGCCCAATTCGCCAACGCGGGGCCCCACGAGGGCCATTCGGGTCGACCCGAACATTCGCCGCCGATAGAGTCTCCGTCGCCTTCTATTTCGGAAGGGACTGTTCAAACGGACAGTGACGTCACCACACTTAACGGTTCGATAACGGATTTGTTCACGCCCGTGGGGTCCAGTGGTTACGCATCCGATTACGGGATTTTCCCGGGCTTTGATGATTTCAATGGTGACTTTTATGTGCCGGAAATGCAGAATGTTAATTACGGAGAAGGAAACGGGGATGGCTACATAGTTGATGAGTCTTTCTTATGGAATTTTTGA 606 0.5314 MMVKPRSSEKPEEEHSDSKYKGVRKRKWGKWVSEIRLPNSRQRIWLGSYDTAEKAARAFDAAMFCLRGRNAKFNFPDNPPDIAAGESMTPSQIRAAAAQFANAGPHEGHSGRPEHSPPIESPSPSISEGTVQTDSDVTTLNGSITDLFTPVGSSGYASDYGIFPGFDDFNGDFYVPEMQNVNYGEGNGDGYIVDESFLWNF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2172 201 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Aed6g2172 201 MobiDBLite consensus disorder prediction 102 133 - -
Aed6g2172 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017-LIKE 7 201 - -
Aed6g2172 201 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Aed6g2172 201 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Aed6g2172 201 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Aed6g2172 201 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Aed6g2172 201 CDD AP2 18 78 IPR001471 GO:0003700|GO:0006355
Aed6g2172 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 201 - -
Aed6g2172 201 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Aed6g2172 201 MobiDBLite consensus disorder prediction 1 23 - -
Aed6g2172 201 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2172 Aed-Chr6 24036878 24037483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2172 18 201 AP2-EREBP Transcription Factor Family AT1G19210 50.794 2.51e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed6g2172 AP2 6.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2172 - - gmx:732656 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2172 6 24036878 24037483 Aed6g2172 6 24036878 24037483 ECH