Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2169 ATGCAGCCACAGAGGATAAGGCAACATGCCATGATGCAACCCTCTCTCTACCACCACCCTGCTCTCCTTACTCCTCCCCAGATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTTTATGTCGGCAACATTCATCCCCAGGTTACGGATTCCCTTCTTCAAGAGCTTTTTTCAACTGCAGGCGCCCTTGAGGGATGCAAGCTTATTAGGAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGAAGTTCTGCTGCATTTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGGCAGCCTATTAAGGTTAATTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAGGTCACTTTAATATTTTTGTCGGTGACCTTAGTCCTGAGGTTACAGATGCAACATTGTATGCTTGCTTCTCTGTATATCCAACTTGTTCTGATGCAAGGGTAATGTGGGACCAGAAGACGGGCCGCTCCAGGGGATTTGGATTTGAGGCCCAAAGTGCTATAAATGAATTGACTGGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAATACTGGTGATGAAAAGCAGATTTCGGATTCGAAAAGTGTCGTGGAGTTGACCAGTGGAACATCTGAAGAAGGCCAGGAAATAGCCAATGATGACACTCCCGAGAAGAATCCTCAATATACCACTGTTTATGTTACTTCTGTTGACCTCCATCAGCATTTTCATTCTCTTAATACCGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCTCGATTTCTATTTGGCAAACCTATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCCGGGAACTTCCTCAACTCCTCTTCCCCCACCTACCTCTGCGAATGTGTCAGGCTTTTCTCTTGCTGGTCTTGCAGCGTATGAACGCCAAATGGCTTTGAGTAAAATGGGTGGTGCACACGCCCTCATGCATCAGCAAGGTCAACATGCCCTGAAGCAGGTAGCCATGGGAATGGGTGCTCCTGGGGCTGGTTATGATGCAAGATTTCAGAATGTTGCGTCAACCCAGCACCTAATGTATTATCAGTAA 1194 0.464 MQPQRIRQHAMMQPSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPTCSDARVMWDQKTGRSRGFGFEAQSAINELTGKWLGSRQIRCNWATKGANTGDEKQISDSKSVVELTSGTSEEGQEIANDDTPEKNPQYTTVYVTSVDLHQHFHSLNTGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARFLFGKPIKCSWGSKPTPPGTSSTPLPPPTSANVSGFSLAGLAAYERQMALSKMGGAHALMHQQGQHALKQVAMGMGAPGAGYDARFQNVASTQHLMYYQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2169 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 176 IPR000504 GO:0003723
Aed6g2169 397 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 393 - -
Aed6g2169 397 MobiDBLite consensus disorder prediction 221 242 - -
Aed6g2169 397 SMART rrm1_1 132 198 IPR000504 GO:0003723
Aed6g2169 397 SMART rrm1_1 47 116 IPR000504 GO:0003723
Aed6g2169 397 SMART rrm1_1 246 308 IPR000504 GO:0003723
Aed6g2169 397 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 2 393 - -
Aed6g2169 397 Gene3D - 223 317 IPR012677 -
Aed6g2169 397 Gene3D - 39 125 IPR012677 -
Aed6g2169 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 196 IPR000504 GO:0003723
Aed6g2169 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 249 306 IPR000504 GO:0003723
Aed6g2169 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Aed6g2169 397 CDD RRM1_TIA1_like 48 118 - -
Aed6g2169 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 312 IPR000504 GO:0003723
Aed6g2169 397 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Aed6g2169 397 Gene3D - 126 219 IPR012677 -
Aed6g2169 397 SUPERFAMILY RNA-binding domain, RBD 124 207 IPR035979 GO:0003676
Aed6g2169 397 CDD RRM2_PUB1 132 199 - -
Aed6g2169 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Aed6g2169 397 SUPERFAMILY RNA-binding domain, RBD 237 318 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2169 Aed-Chr6 24001637 24020681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2169 47 312 Eukaryotic Initiation Factors Gene Family AT2G23350 29.225 1.11e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2169 K13201 - gmx:100813736 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2169 6 24001637 24020681 Aed6g2169 6 24001637 24020681 ECH