Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2142 ATGGGGAGAAGCCCTTGTTGTTCAAAGGAGGGCTTGAATAGAGATATTAAGAGAGGCAATATATCCCCCGATGAAGAAGACCTCATCATCAGGCTCCACAAGCTCCTGGGAAACAGATGGTCTTTAATAGCGGGGAGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAATTTAGGAAAAAAAGTGGTGAAAGATGATGGCCACCAAGAAGCAGCAGCAGCAGCAGCGAATCCGATGCTACTATCTCCTAATACTAAATTACTAGATTCCCATGTTGTCCGTACAAAGGCTACCAAGTGCACGAAGCAGGTATTATTCCTAAACCCATCAATAATGCAGACAGAGACAGAGACAGAAGCAATATTGCCTGCAGTGGAACACAGTACTACATACGACAACGGGTTCCTGTCGTCGTCGGATTTGCAGCTGATAGATTTCAACCAGCTGGGGCTGGGGGATATCTGCTTGTCTGATCTTCTCAACTCAGATTTCTCAAACGCCTACAACTTCACCACCTGCACTCATATTGTCGACCACGACCACGACCAGTTATCGCCTTCTTCGGCCGATGAACCTCTCAATGCTTCCAACAACCTTCATTCTTTCATTCAGTTCCTTGACTCCACTCAGGAGGAATTCAATCACTAG 663 0.457 MGRSPCCSKEGLNRDIKRGNISPDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVVKDDGHQEAAAAAANPMLLSPNTKLLDSHVVRTKATKCTKQVLFLNPSIMQTETETEAILPAVEHSTTYDNGFLSSSDLQLIDFNQLGLGDICLSDLLNSDFSNAYNFTTCTHIVDHDHDQLSPSSADEPLNASNNLHSFIQFLDSTQEEFNH 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2142 220 Pfam Myb-like DNA-binding domain 18 63 IPR001005 -
Aed6g2142 220 ProSiteProfiles Myb-like domain profile. 13 63 IPR001005 -
Aed6g2142 220 PANTHER MYB-RELATED PROTEIN 308-LIKE 15 178 - -
Aed6g2142 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 67 IPR017930 -
Aed6g2142 220 Gene3D - 22 83 - -
Aed6g2142 220 SUPERFAMILY Homeodomain-like 19 73 IPR009057 -
Aed6g2142 220 CDD SANT 22 63 IPR001005 -
Aed6g2142 220 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 15 178 - -
Aed6g2142 220 SMART sant 17 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2142 Aed-Chr6 23823593 23824821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2142 9 177 MYB Transcription Factor Family AT5G35550 43.195 5.02e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed6g2142 Myb_DNA-binding 4.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2142 K09422 - gmx:100781908 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0944 4 8621940 8623622 Aed6g2142 6 23823593 23824821 PCT