Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2138 ATGGGTGATTTCCAAGGCCCCTTCATAGTGTCACCCCCTCCTTCACCTTCTTCTTCGGATAAGTCGAGCACAACCATGTTATACTATGGGCTAGTGGTGGTGGGGGTTGCAGCCATGGCATTAGCCCTATACAACTTCATCATCGTGAAGCGAGGTAGGAGGCGCCATATGCAGGGTGAAGGAGGGGCAAATGGGTTGGTGGAAGTGGTGATGGAAACTAGTAGAATTGATCAGAACTGCCAAAGGAACAGCAACTTCAACTTGCTCTCAAGCTTCAGGTTCAAGAAAGAAGGAGATAATGATTATGATTATGATGATGAGTGCCCAGTTTGCTTATCGGGTTTTGAAGAAGGGGAAGAAGTGAGGAAGCTGCCACGGTGCAAGCACTGGTTCCACGCACCATGCATAGACATGTGGCTATACTCTCATTTCGATTGCCCAATTTGTCGAACACCTGTTCTGCAATTCTGTCACCGTTTTCATTCCGGTGCTGCTGCTGGCGGCGGCGGCGTTTCGGTATGA 522 0.4923 MGDFQGPFIVSPPPSPSSSDKSSTTMLYYGLVVVGVAAMALALYNFIIVKRGRRRHMQGEGGANGLVEVVMETSRIDQNCQRNSNFNLLSSFRFKKEGDNDYDYDDECPVCLSGFEEGEEVRKLPRCKHWFHAPCIDMWLYSHFDCPICRTPVLQFCHRFHSGAAAGGGGVSV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2138 173 SUPERFAMILY RING/U-box 100 156 - -
Aed6g2138 173 Pfam Ring finger domain 106 150 IPR001841 -
Aed6g2138 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 162 IPR013083 -
Aed6g2138 173 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Aed6g2138 173 MobiDBLite consensus disorder prediction 1 21 - -
Aed6g2138 173 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 156 IPR044675 -
Aed6g2138 173 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 156 - -
Aed6g2138 173 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2138 Aed-Chr6 23803537 23804058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2138 30 173 C3H Transcription Factor Family AT5G17600 35.333 1.31e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2138 - - gmx:102668213 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2138 6 23803537 23804058 Aed6g2138 6 23803537 23804058 ECH
Aed6g2138 6 23803537 23804058 Aed4g0936 4 8561819 8562385 PCT