Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2133 ATGAAACCATTATTGCCGAATCATCCTCATACTATGTACAATTATTCACAAGTTGATTCTAGTCATCCAATGGCTCATACTACTTATCCCTGTGGTGATCCTTATTTTGGTAGTTCAATGGTTGCTTATGGACCACAGGCTATTAATCAACAAATGGTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGAGCTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGCATACTGAGAAGGCGGCAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCATTGAATAGGGTTAGGGGGTCCGGGGGACGCTTTCTTAGCGCGAAACAGCTGCAAGAGTCTAACGCAGAACTTGTCACTGATTCCCATTCGGGCCCTGGTCCTGTCAATGTTTATCAAAAGAACGATGCATCAGAGGCAGAAAGTGATCCCTCAAGAACTGGAGAAGATGCATCTATCACATTCACAGCCATCTCAGGCTTGACAAGTATGTCCAGTAACGGTGTCAATTTCAGGCAGCAGCCCGAGCACAACTTCTTGGGGAACTCCCCAAACATGGGTGGATCATCACAATGCAGCGGGGGAGGACTTGCCTTTGGCGGTGGAGCTCGGCATTGTACTTCAGTTGGAAGGTGA 708 0.4703 MKPLLPNHPHTMYNYSQVDSSHPMAHTTYPCGDPYFGSSMVAYGPQAINQQMVPQMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSAKQLQESNAELVTDSHSGPGPVNVYQKNDASEAESDPSRTGEDASITFTAISGLTSMSSNGVNFRQQPEHNFLGNSPNMGGSSQCSGGGLAFGGGARHCTSVGR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2133 235 MobiDBLite consensus disorder prediction 140 162 - -
Aed6g2133 235 SMART cbf3 71 132 IPR001289 GO:0003700|GO:0006355
Aed6g2133 235 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 75 129 IPR001289 GO:0003700|GO:0006355
Aed6g2133 235 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 230 IPR001289 GO:0003700|GO:0006355
Aed6g2133 235 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 230 - -
Aed6g2133 235 ProSiteProfiles NF-YA/HAP2 family profile. 72 132 IPR001289 GO:0003700|GO:0006355
Aed6g2133 235 ProSitePatterns NF-YA/HAP2 subunit signature. 77 97 IPR018362 GO:0003677|GO:0016602
Aed6g2133 235 PRINTS CCAAT-binding transcription factor subunit B signature 106 129 IPR001289 GO:0003700|GO:0006355
Aed6g2133 235 PRINTS CCAAT-binding transcription factor subunit B signature 75 97 IPR001289 GO:0003700|GO:0006355
Aed6g2133 235 MobiDBLite consensus disorder prediction 140 174 - -
Aed6g2133 235 Gene3D - 72 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2133 Aed-Chr6 23769081 23777560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2133 16 138 CCAAT-HAP2 Transcription Factor Family AT1G17590 58.871 2.54e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aed6g2133 CBFB_NFYA 3.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2133 K08064 - gmx:100792905 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2133 6 23769081 23777560 Aed6g2133 6 23769081 23777560 ECH