Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2132 ATGGACGGTGGAGCGAACTACAACCCTCGCACCGTGGAAGAGGTTTTTCGGGACTTCAAGGGTCGTCGAGCCGGCATGATCAAGGCTCTCACCACTGATGTTGATGAATTTTTCCAGCAGTGCGATCCTGAAAAGGATAATCTTTGTCTGTATGGGTTCCCAAATGAGCAATGGGAAGTTAACTTACCGGCGGAAGAAGTTCCTCCAGAGCTGCCTGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGAATGCAAGATAAGGACTGGCTGTCTTTAGTTGCTGTTCACAGTGATGCATGGTTACTTGCAGTGGCTTTCTACTTTGGGGCACGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTGTTCACTATGGTTAATGATTTACCAACAATATTTGAAGTTGTGACTGGAAGCGCAAAAAAACAGACTAAGGAAAAGTCATCCATTTCAAACCACACCAGCAACAAATCAAAATCTAGTTCAAAAGGGCGAGGACCTGAATCAGGGAAGTATCCAAAGCAAACAAAGGACGAGGAGGATGAGGTAGTTGACGAAGAAGATGAGGAGGAGCATGGCGACACATTGTGTGGTGCATGTGGGGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGCGACTTATGTGAAAAGTGGTTCCATGGTAAGTGTGTGAAGATCACTCCAGCTAGGGCCGAGCACATCAAGCAGTACAAGTGTCCCTCATGCAGCAATAAGAGAGCACGGCCTTAA 756 0.4643 MDGGANYNPRTVEEVFRDFKGRRAGMIKALTTDVDEFFQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMVNDLPTIFEVVTGSAKKQTKEKSSISNHTSNKSKSSSKGRGPESGKYPKQTKDEEDEVVDEEDEEEHGDTLCGACGENYASDEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2132 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Aed6g2132 251 MobiDBLite consensus disorder prediction 145 191 - -
Aed6g2132 251 PANTHER CPG BINDING PROTEIN 3 251 IPR045104 GO:0006355|GO:0042393
Aed6g2132 251 Pfam PHD-finger 198 247 IPR019787 -
Aed6g2132 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Aed6g2132 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 251 - -
Aed6g2132 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Aed6g2132 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Aed6g2132 251 CDD PHD_AL_plant 197 247 IPR044104 -
Aed6g2132 251 MobiDBLite consensus disorder prediction 145 166 - -
Aed6g2132 251 SMART PHD_3 197 245 IPR001965 -
Aed6g2132 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2132 Aed-Chr6 23763393 23767927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2132 1 250 Alfin-like Transcription Factor Family AT3G42790 74.900 7.87e-124 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aed6g2132 Alfin 3.4e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2132 - - gmx:100500110 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2132 6 23763393 23767927 Aed6g2132 6 23763393 23767927 ECH