Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2119 ATGTCGACACCGTCAGCGAGATCGGTTGCCGTTGCCGTGAGCGTGGGGTCCGGCGGCGCCAAGGGTAGCCGGAGAGCCGTGCAGTGGGCGGTGGAGAATCTCGTCCCTCAAACCGATAGGTTCATCTTAGTTCACGTCATCCCTCCAATCACTTCAATTGCAACACCAAGTGGAGAGTATGTTCCAATCTCGGAAGCAGACGCGGAAGTGTTTGCAGCTTACGTGCAGGATGTGAGAATAAAGTCTGAACAAATCTTTGTTCCGTTCAAGAAACTCTGCGATTCAAACACGATGGAAACCGTGCTGCTAGAAGATGACAATGCTGCAGAAGCACTTCTTAGCTTCATTTCGGAGTCCGGGGTCCAAATATTAGTGCTCGGATCTGACTCCTCTAATTTCATAACAAGGAAGCTAAAAGGACCTGGGATACCAACTACCATTCTAAGATGTGTTCCTGACAGTTGTGATGTATATATTGTAGCTAGAGATAGAATAATATCGAAGTTGGCTGATTTTTCATCTTCACGTTTGCATGAGAGTAGCCCAAGGTACATCATGTCTACTAAAGTAAATAAAGCAGACAATGGTGCTGGCATTGGCAGAGACATGTCTGGAATTAGTTCATCTACAAATGAACCTAAAATTCTAAAGAATTTCCGGTTTTTATCAATATCAGAGCGTAGTTACATTGGTCTGCAATCATTTAGTCGTAGGAATTCTTTTGAAAATTCTACCAAAAATGAAGAAGAAAATCCGGAAAACTGTGGAGATGATATTGAAACTATTAGCCTCCACTCATTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGTCATGCAAGAAGAAGTGGAACAGCTGCAGCTGGAGTTGCAAAATACTATCACCATGTACAAACAAGTTTGTGAAGAACTGGTTGAAGCTCAAAACCAGATGGCTGAACTTGATGTCCTTAAAGAATCAATAGAAAAACAGAGAATTGTTGATACATTGCTCTCAAATGACAGGAGATACAGAAAGTACACCATGGATGAAATCAAGTTAGCAACAAACTTCTTCGCTGAGGACTCGATAATTGGTGAGGGAGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACACACCAGTAGCCGTAAAGATTGAGATTCTTAGTCAACTACATCATCCTAATATGGTTTTGTTACTTGGAGCCTGTCCTGAGAGTGGTTGTCTTGTTTATGAATACATGGAAAATGGGAGTCTGGAAGACTATCTTCTAAAAAAAAATGGAAAGCCACCACTTCCTTGGTTTTTTCGATTTCGTATGGTTTTTGAAATGGCTTGTGGACTCTCATTCTTGCATAATTCAAAGCCAGATCCTATTGTCCATCGAGACATAAAACCTGGCAATATCTTGTTAGACAGAAATTATGTGAGCAAAATTGCAGATGTTGGGCTTGCTAAACTCATTGCAGAAGTGGTGCCTGACAATGTCACTGAGTACAGAGAATCAATGCTTGCCGGTACTCTGCATTACATGGACCCAGAGTATCAAAGAACTGGGACTGTCCGACCAAAATCAGATGTATATGCTTTTGGAGTTATAACTCTCCAATTGATAACTGGTCGCCATGCACGTGGACTCATTGTGATCGTTGAAGATGCAATTAGAAATGGCTCCTTCCGTGATATTTTAGATCCATCAGCTGGAGATTGGCCACTGGATGAGACAATGGAATTGACTCAAGTAGCCCTTAAATGCACTGCACTTAGATGCAGAGATAGACCAGAAATTGATACTGAAGTTCTTCCAGTGCTTGAAAGATTTTCTGATGCGGCAAATGCTAGTGCAAGGATGGGAAGAAATGGTGTAAGTGCGCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCTTATATTGCTGCGGATGGATTCACTTATGAGTATAGAGCAATCAAGGCATGGCTCAGCAAACACAATGTGTCACCAATGACAAAGCTTAAACTCCAGCATTCTGTGTTGACTCCAAACCACACTTTACGTTCTGCCATTCAGGAGTGGAAATCAGGAGTAATCTTTTGA 2076 0.4186 MSTPSARSVAVAVSVGSGGAKGSRRAVQWAVENLVPQTDRFILVHVIPPITSIATPSGEYVPISEADAEVFAAYVQDVRIKSEQIFVPFKKLCDSNTMETVLLEDDNAAEALLSFISESGVQILVLGSDSSNFITRKLKGPGIPTTILRCVPDSCDVYIVARDRIISKLADFSSSRLHESSPRYIMSTKVNKADNGAGIGRDMSGISSSTNEPKILKNFRFLSISERSYIGLQSFSRRNSFENSTKNEEENPENCGDDIETISLHSFDSIASAQREQLVMQEEVEQLQLELQNTITMYKQVCEELVEAQNQMAELDVLKESIEKQRIVDTLLSNDRRYRKYTMDEIKLATNFFAEDSIIGEGGYGKVYKCNLDHTPVAVKIEILSQLHHPNMVLLLGACPESGCLVYEYMENGSLEDYLLKKNGKPPLPWFFRFRMVFEMACGLSFLHNSKPDPIVHRDIKPGNILLDRNYVSKIADVGLAKLIAEVVPDNVTEYRESMLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIVIVEDAIRNGSFRDILDPSAGDWPLDETMELTQVALKCTALRCRDRPEIDTEVLPVLERFSDAANASARMGRNGVSAPSQYYCPILQEIMDDPYIAADGFTYEYRAIKAWLSKHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVIF 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2119 691 Pfam Protein tyrosine and serine/threonine kinase 381 592 IPR001245 GO:0004672|GO:0006468
Aed6g2119 691 SUPERFAMILY RING/U-box 617 686 - -
Aed6g2119 691 Gene3D Phosphorylase Kinase; domain 1 381 413 - -
Aed6g2119 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 620 689 IPR013083 -
Aed6g2119 691 ProSiteProfiles U-box domain profile. 619 691 IPR003613 GO:0004842|GO:0016567
Aed6g2119 691 PANTHER OS02G0152300 PROTEIN 8 311 - -
Aed6g2119 691 PANTHER OS02G0152300 PROTEIN 309 688 - -
Aed6g2119 691 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 15 142 - -
Aed6g2119 691 SMART Ubox_2 623 685 IPR003613 GO:0004842|GO:0016567
Aed6g2119 691 CDD STK_N 8 162 - -
Aed6g2119 691 ProSiteProfiles Protein kinase domain profile. 353 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g2119 691 ProSitePatterns Protein kinases ATP-binding region signature. 359 380 IPR017441 GO:0005524
Aed6g2119 691 Gene3D Transferase(Phosphotransferase) domain 1 414 619 - -
Aed6g2119 691 SUPERFAMILY Protein kinase-like (PK-like) 336 593 IPR011009 -
Aed6g2119 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Aed6g2119 691 Coils Coil 270 325 - -
Aed6g2119 691 Gene3D HUPs 8 160 IPR014729 -
Aed6g2119 691 SMART serkin_6 353 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g2119 691 CDD RING-Ubox_WDSUB1_like 624 664 - -
Aed6g2119 691 Gene3D Phosphorylase Kinase; domain 1 332 380 - -
Aed6g2119 691 Pfam U-box domain 621 686 IPR003613 GO:0004842|GO:0016567
Aed6g2119 691 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 8 311 - -
Aed6g2119 691 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 309 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2119 Aed-Chr6 23671558 23676164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2119 4 687 Plant U-box Gene Family AT5G57035 48.077 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Aed6g2119 PK_Tyr_Ser-Thr 7.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2119 - - gmx:100805896 1177.54