Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2116 ATGTGCGGTGACGCCACGAACTGGGACGAAGAGGTGTACAGGGAAACCGTACTGAAGGAGAGAGAGATTCAAACCCGAACCGTTTTCCGAACCGCTTGGGCTCCACCCTACACCTCCAACCTCGGCACTCTCCTCGTTGCCTCTAGCGACGGTTCCGTCGCATCCTACTCCATAGCTTCCTCCATCGCTGCCTCTAAGCTAAAAAATCCATTCGGTTTTGTCAATACCGATACAGATGAGTTATTGGCTGAGCCAAATTGCTTCGTTCAAGCGCACGATGGACCTGCGTACGATGTCAAATTTTACGGTGATGGAGAGGATGCTCTGTTGCTGAGCTGTGGTGATGATGGTCGGATTCGAGGATGGAGATGGAAGGAATTTTCAAGCTCAAATTATTCTGTTTCTTCCCAAGGAAATGATATCAAACCTGTACTTGATGTGGTGAATCCTCAGCACAAAGGTCCTTGGGGTGCGCTTTCACCTATCCCTGAAAATAATGCTATTGCTGTTAATACTCAGGGGGGATCTGTTTTTGCCGCATCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAATGGTATTCAAGGGGCACATGGACTATTTGCATTGTATAGTTGCTCGCAACTCATCTAATCAGATCATAACAGGTTCGGAGGATGGGACCACACGAATTTGGGATTGCAAAAGTGGAAAGTGTACCCAAGTGATTGATCCAGCAAAAGATTTGAAGTTAAAGGGATCTGCTTCATGGGTTGGCTGTGTTGCTCTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTTCAGAATGCGTATCAAAGATTCAAATTCGTGCTTGTGTACAGGACATGTTATTTGATAATAATCAAATTTTGACAGTTGGTACAGATCCTCTACTCAATCGCTTTGACATGAACGGCACTGTCCTTTCACAAATACAGTGTGCTCCTTCATCATCTTTTTCTATCTCCTTACATCCTGCAGGGGTTATGGCAGTTGGAGGTTATGGATGTCTCGTTGATGTTATCTCACAATTTGGCAGCCACATGTGCACATTTCATTGCTAG 1116 0.4525 MCGDATNWDEEVYRETVLKEREIQTRTVFRTAWAPPYTSNLGTLLVASSDGSVASYSIASSIAASKLKNPFGFVNTDTDELLAEPNCFVQAHDGPAYDVKFYGDGEDALLLSCGDDGRIRGWRWKEFSSSNYSVSSQGNDIKPVLDVVNPQHKGPWGALSPIPENNAIAVNTQGGSVFAASGDSCAYCWDVETGKVKMVFKGHMDYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCTQVIDPAKDLKLKGSASWVGCVALDASESWLACSSGRNISLWNLPASECVSKIQIRACVQDMLFDNNQILTVGTDPLLNRFDMNGTVLSQIQCAPSSSFSISLHPAGVMAVGGYGCLVDVISQFGSHMCTFHC 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2116 371 SUPERFAMILY WD40 repeat-like 33 360 IPR036322 GO:0005515
Aed6g2116 371 Pfam WD domain, G-beta repeat 196 232 IPR001680 GO:0005515
Aed6g2116 371 Pfam WD domain, G-beta repeat 250 281 IPR001680 GO:0005515
Aed6g2116 371 Gene3D - 8 140 IPR015943 GO:0005515
Aed6g2116 371 Gene3D - 147 370 IPR015943 GO:0005515
Aed6g2116 371 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 232 - -
Aed6g2116 371 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Aed6g2116 371 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 9 371 IPR042626 -
Aed6g2116 371 SMART WD40_4 155 190 IPR001680 GO:0005515
Aed6g2116 371 SMART WD40_4 82 123 IPR001680 GO:0005515
Aed6g2116 371 SMART WD40_4 243 281 IPR001680 GO:0005515
Aed6g2116 371 SMART WD40_4 284 320 IPR001680 GO:0005515
Aed6g2116 371 SMART WD40_4 193 232 IPR001680 GO:0005515
Aed6g2116 371 SMART WD40_4 322 360 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2116 168 237 Eukaryotic Initiation Factors Gene Family AT2G46280 31.429 2.03e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2116 K13175 K03257 gmx:100806423 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2116 6 23655998 23661503 Aed6g2116 6 23655998 23661503 ECH