Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2115 ATGCTCATTCTCTTTTCTGTTTCTGTTCTGCGCGCTATTCATTATCGTAAAACTGCGTTTTATTTGGTACCATATATCATGGCTGGACTTGCACCTGAGAGCTCTCAGTTTGATGCTCGTCAATATGATTCCAAAATGAGTGACATACTTTCATCTGAGGGACAAGAGGACTTCTTCACATCCTATGATGAGGTTTATGATAGTTTTGATGCTATGGGTTTGCAGGAGAATCTTCTCAGAGGAATTTATGCATATGGTTTTGAGAAGCCTTCAGCCATTCAGCAAAGGGGAATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAGTCTGGAACTGGGAAGACGGCTACTTTCTGCTCTGGTATTCTGCAGCAACTTGACTATAGCTTGACGCAATGCCAGGCCTTGGTTTTAGCACCAACTCGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGGGCACTTGGAGATTATCTAGGCGTGAAGGTTCATGCTTGTGTTGGAGGTACTAGTGTGCGTGAAGATCAACGCATTCTATCCAGTGGTGTTCATGTTGTGGTTGGTACCCCTGGTCGTGTGTTTGATATGCTGCGCAGGCAGTCACTTCAGCCAGACCACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTTAAGGATCAGAATACCAGGGACATTATCATGCGTGAATTCCGTTCTGGTTCTTCACGTGTCTTGATAACCACTGATCTTTTGGCTCGTGGTATTGATGTCCAACAAGTGTCTCTAGTTATCAATTTTGATCTCCCAACACAGCCTGAGAATTATCTCCACCGTATCGGTCGTAGTGGGAGGTTTGGAAGGAAAGGTGTTGCCATCAATTTTGTCACAAAGGAAGACGAGAAAATGCTGTTTGACATCCAGAAGTTTTACAATGTGCAAGTTGAGGAGCTGCCTTCAAATGTTGCTGAGCTCCTTTGA 984 0.4431 MLILFSVSVLRAIHYRKTAFYLVPYIMAGLAPESSQFDARQYDSKMSDILSSEGQEDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDEKMLFDIQKFYNVQVEELPSNVAELL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2115 327 CDD SF2_C_DEAD 225 297 - -
Aed6g2115 327 Pfam DEAD/DEAH box helicase 92 232 IPR011545 GO:0003676|GO:0005524
Aed6g2115 327 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 271 IPR014001 -
Aed6g2115 327 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 32 229 - -
Aed6g2115 327 PANTHER - 32 229 - -
Aed6g2115 327 PANTHER - 228 320 - -
Aed6g2115 327 SMART helicmild6 216 288 IPR001650 -
Aed6g2115 327 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 228 320 - -
Aed6g2115 327 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 95 IPR014014 GO:0003724
Aed6g2115 327 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 128 327 IPR001650 -
Aed6g2115 327 Gene3D - 33 248 IPR027417 -
Aed6g2115 327 SMART ultradead3 86 280 IPR014001 -
Aed6g2115 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 323 IPR027417 -
Aed6g2115 327 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 214 222 IPR000629 -
Aed6g2115 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 236 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2115 Aed-Chr6 23650340 23652742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2115 223 305 Eukaryotic Initiation Factors Gene Family AT3G13920 91.566 5.63e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2115 K03257 - gmx:112999960 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2115 6 23650340 23652742 Aed6g2115 6 23650340 23652742 ECH
Aed6g2115 6 23650340 23652742 Aed4g0914 4 8315068 8318288 PCT