Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2108 ATGAAATCCCAATCAACTGATCAGAATAATCCATCATCTACGGCTGATAGTCCTCATCATTGTTTACCACTCACTTCCCATTCTTCCCACTCTCCTGAAACAACCCTTCCCACACCAGAGGGTGAACATGAATCAATAGTAAGAGCACTTCTCAGTGTTATAACCTCTTCTTCTTCAACTGGAGATACAGCTTTCAAGAGATATAATAATAGATCAGATATTATAATGAAGAACCCAAACATAACAGTACCCGATATGGGCTCCAATTTTAATTTAATGAGAATGAGAGAAAGCGTTATTCAACCACCTCGTCCCATTCAGCAGCATCACATGATAACAGAGCGAAGAAGGCGTGAAAAACTCAATCAGAATTTTCAAGCACTTAGAGCACTTCTTCCTCCCGGAACTAAGGGATGTATATATATCAACATTAATTTCTCTTATAATTTAGCAATAATTCAATGCTTATATGATTTAGAAAAACAAAGCGACGATCCTTACAACAGCAAAAGAGACAATGAGATGTTTGATGGATGA 537 0.3724 MKSQSTDQNNPSSTADSPHHCLPLTSHSSHSPETTLPTPEGEHESIVRALLSVITSSSSTGDTAFKRYNNRSDIIMKNPNITVPDMGSNFNLMRMRESVIQPPRPIQQHHMITERRRREKLNQNFQALRALLPPGTKGCIYININFSYNLAIIQCLYDLEKQSDDPYNSKRDNEMFDG 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2108 178 Pfam Helix-loop-helix DNA-binding domain 108 160 IPR011598 GO:0046983
Aed6g2108 178 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 16 137 IPR044658 -
Aed6g2108 178 CDD bHLH_AtbHLH_like 110 137 IPR045239 -
Aed6g2108 178 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 16 137 - -
Aed6g2108 178 MobiDBLite consensus disorder prediction 1 42 - -
Aed6g2108 178 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 136 IPR036638 GO:0046983
Aed6g2108 178 MobiDBLite consensus disorder prediction 1 38 - -
Aed6g2108 178 Gene3D - 107 174 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2108 Aed-Chr6 23605027 23605563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2108 103 137 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 71.429 1.89e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed6g2108 HLH 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2108 - - gmx:102667064 112.464