Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2107 ATGGATGGCGTCTTCGCCCTCCCTGAAGCTGCAAGAGCTGATTTTCTCCGGTCTCTGCTGCAATCTTTTGGCTGCACTTACGTTTCTCTCTGGCAATATGACTCCAATTTATCCAATCGTTTGTTCTTCTTGGATGGGTTCTACGACGTAACCAACAACCTAGAGAATCATGAAGCTGAAAGGCTTTTTCACCAATATCGGGCTTTAACGTTTGATGTCAATCATCACTGTGTTCCTGGAATCGCTTTCAGGAACCACCTTCCCTACATGGAGCTGCAACAAATGGACCTTCTAAGGCTCGCATCGACACAAATACAGACACAATTCTTTCAGAATTCACATTCATCATCATCTTCATTCGTATCATTATCTACGGGTAGCACTTCCCAGTCCCACTTACCTGAAACACAAACTAGTCCACACCAACCATTAGATTTAGCTCCAGTAATTCCAAGTTATTTTTTCACACCAGAGGGTGAACATGAAGCAATAGTAGGAGCAATTCTCCATGTTTTATCTACACCTTCTTCAACTCCTGATCAGCAGCATCAACCCCACCAAAATTTTCCCAATTATGCTTCAATAACACGTCCAGAAGATACAGTTCTCAATAGATCAGATATAAACCCAAATATAACAGTACTACCCTCCAATTTTCATAGCCAAAGCCTGCACAATAGATCATTTGCATTCTTTGGAAACTTAAATTTGACGAGAATGAGAGGAAGCAATCAAGCATCCCGTCCCATTAGTACTACTCAGCAGCATCATATGATAACAGAGCGAAGAAGGCGTGAAAAACTCAATGAGAATTTTCAAGCACTTAGAGCACTTCTTCCTCCCGGAACTAAGAAAAACAAAGTGTCGATTCTTACAACAGCAAAAGAGACATTGAGATGTTTGATGGATGAAATTGAAAAGCTTAACATGAGAAATCAGCAGTTGATGACAGTTTTGTCAGGCAAAGAAGAAGCTACAGCTATTACTAGTGAAGAAAACGATCAAAGATTGAATGTTGGGGTTTCGCGTGTATCGGAATCAAGTTCATCAGAAGAGCAAGTGGTGGAGTTGCAAGTAACTGTGAGAGGAGAAAGTTCTCAAGCTGATGTATTGATTCGGTTATTGGAATTCTTAGGAGGGGTTCAGAACGTAAGCTTAATTTCCACGGGCGCAAACAATCACCAGATTACGGGAGGGACAGTGATTAATCAATTAACCTTCAGGCTGAGAATTAGTGAGGGCAGTGAATGGGACGAGCGTGCCTTCCAGGAAGCAGTTAGAAGAGTGGTTGCTGATGTACTTCAATGCCAACTGAACCAATAA 1323 0.4165 MDGVFALPEAARADFLRSLLQSFGCTYVSLWQYDSNLSNRLFFLDGFYDVTNNLENHEAERLFHQYRALTFDVNHHCVPGIAFRNHLPYMELQQMDLLRLASTQIQTQFFQNSHSSSSSFVSLSTGSTSQSHLPETQTSPHQPLDLAPVIPSYFFTPEGEHEAIVGAILHVLSTPSSTPDQQHQPHQNFPNYASITRPEDTVLNRSDINPNITVLPSNFHSQSLHNRSFAFFGNLNLTRMRGSNQASRPISTTQQHHMITERRRREKLNENFQALRALLPPGTKKNKVSILTTAKETLRCLMDEIEKLNMRNQQLMTVLSGKEEATAITSEENDQRLNVGVSRVSESSSSEEQVVELQVTVRGESSQADVLIRLLEFLGGVQNVSLISTGANNHQITGGTVINQLTFRLRISEGSEWDERAFQEAVRRVVADVLQCQLNQ 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2107 440 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 111 IPR044658 -
Aed6g2107 440 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 113 433 IPR044658 -
Aed6g2107 440 SMART finulus 258 307 IPR011598 GO:0046983
Aed6g2107 440 MobiDBLite consensus disorder prediction 121 144 - -
Aed6g2107 440 Gene3D - 251 325 IPR036638 GO:0046983
Aed6g2107 440 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 111 - -
Aed6g2107 440 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 113 433 - -
Aed6g2107 440 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 254 317 IPR036638 GO:0046983
Aed6g2107 440 MobiDBLite consensus disorder prediction 121 143 - -
Aed6g2107 440 Coils Coil 291 318 - -
Aed6g2107 440 Pfam Helix-loop-helix DNA-binding domain 255 301 IPR011598 GO:0046983
Aed6g2107 440 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983
Aed6g2107 440 CDD bHLH_AtbHLH_like 257 308 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2107 Aed-Chr6 23587992 23590981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2107 215 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 43.210 2.73e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed6g2107 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2107 - - gmx:102667064 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2107 6 23587992 23590981 Aed4g0903 4 8209902 8216492 PCT