Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2093 ATGATTCCAGCCTATCGCCACTCAGTATCTTCTGTTATGCCTCTTGATCTTAATGAAGATCAAAACCATGAGCTCTTCAGTTCAAATCATCCTGCCTCCTCTTCGTTTTCTTCTCTATCTTCATATCCTATTCTCTTCAATCAAGATCAATTAGAAGCTGGATCATACTACTGGGAACCAACAAATAAGCACTTACCAAGCGATGAAGAGGCTGAGAAGATTATCCCCACCAGTGGATCATGGGATCACTCGGTGGCACTTTGGAAAAAAGAAGAGAGGAATGAAAATCCTGAATCATCAGTTGCTGAAGATGGTTCGTTGAAGTGGATGCCTCCGAAGATGAGAATTGTGCGGAAGATGTTGGTGTCGGATCAAACTGATGCATATACGAATACTACGCACAAGTTTGATGATCCGAAACAACCACTGTCGCCACTTGGAACTGATAACAGCAGCAGCAACAACTATTCAAACAACACTGTTAGGGTTTGTTCCGATTGCCACACCACCAAGACTCCTCTATGGAGGAGTGGACCAAGAGGCCCCAAGTCACTTTGCAACGCCTGTGGGATTCGACAAAGGAAGGCAAGACGAGCCATGGCGGCAGCTGCAGCATCGGGAAATGGAACAGTTATTTTGGAAGCTGGGAAATCTGTGAAGAAGGGAAACAAGTTGCAGAAGAAAGAGAAGAAGACAAGAATGGATGATGAGGGTGCAGCAGCACAGATGAAAAAGAAGCGGAAGCTTGGAGTTGGAGGAGCAAAGGCGGCATCAAACAAGTGTGGTTTTGAGGATTTGACAATACGCTTAAGAAAGGACTTACCTATGCATCAAGTTTTCCCTCAGGACGAGAAAGAGGCTGCGATCCTGCTCATGGCTTTATCTTATGGCCTTGTTCGTTCATGA 906 0.4514 MIPAYRHSVSSVMPLDLNEDQNHELFSSNHPASSSFSSLSSYPILFNQDQLEAGSYYWEPTNKHLPSDEEAEKIIPTSGSWDHSVALWKKEERNENPESSVAEDGSLKWMPPKMRIVRKMLVSDQTDAYTNTTHKFDDPKQPLSPLGTDNSSSNNYSNNTVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAASGNGTVILEAGKSVKKGNKLQKKEKKTRMDDEGAAAQMKKKRKLGVGGAKAASNKCGFEDLTIRLRKDLPMHQVFPQDEKEAAILLMALSYGLVRS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2093 301 Gene3D - 159 249 IPR013088 GO:0006355|GO:0008270
Aed6g2093 301 Pfam GATA zinc finger 164 197 IPR000679 GO:0006355|GO:0043565
Aed6g2093 301 MobiDBLite consensus disorder prediction 131 154 - -
Aed6g2093 301 CDD ZnF_GATA 163 191 IPR000679 GO:0006355|GO:0043565
Aed6g2093 301 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 300 - -
Aed6g2093 301 SMART GATA_3 158 209 IPR000679 GO:0006355|GO:0043565
Aed6g2093 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 157 198 - -
Aed6g2093 301 ProSitePatterns GATA-type zinc finger domain. 164 189 IPR000679 GO:0006355|GO:0043565
Aed6g2093 301 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 300 - -
Aed6g2093 301 ProSiteProfiles GATA-type zinc finger domain profile. 158 194 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2093 Aed-Chr6 23486590 23487883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2093 15 299 C2C2-Gata Transcription Factor Family AT4G26150 33.051 1.10e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed6g2093 GATA 3.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2093 - - gmx:100810698 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2093 6 23486590 23487883 Aed6g2093 6 23486590 23487883 ECH
Aed6g2093 6 23486590 23487883 Aed4g0893 4 8082934 8085369 PCT