Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2067 ATGAGTTTCTCGAAGGGTTCTCCTGGCAGCGGCAGCCAGACGCCGCATGATATAGAGGCTGGGTCTCCTGATGCTGATTTTGATGATGGAGACTTTTCTGCTGATCCATTTGATCTTACCAGAACAAAGAATGCTCCTGTTCAACGCCTCAGGCGTTGGAGGCAAGCGGCACTTGTGCTCAATGCTTCTCGTCGATTTCGTTATACCTTGGACTTAAAGAAAGAAGAAGAGAAGAAGCGAGTATTAAGACTTGTTATAGTGCATACACGGGCCATTCAAGCTGCATATCGATTCAAGGCAGCTGGGCAAATGAATGGAACTATAAAACCTCCTCCAAGTCGAAGCTCCACTGGAGAATTTTCAGTTGGACAAGAGCAACTTTCTTCAATTTCAAGGGACCGTGATACTACTGCTCTGCAGGAAAATGGAGGGGTTGTAGGGTTATCACATTTGTTGAAAACCAATTTAGAGAAGGGGATTCATGGTGATGATGCTGACTTGGTAAAACGGAGGAATGTATTTGGCTCCAACAACTACCCTCGAAAGAGTGGAAGAAGTTTTTTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCTGCAATGGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGACGGGGGAAGCATTGCTTTTGCAGTCATTCTTGTTATTCTTGTTACAGTATTCTCCTTTAACGGGCAAAACACCCTCCTTTGTTTGTCCTTCTCTTTCTTAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGACCTAAATGAGCACAAGAGAAACATACGTTTGGAGGTTATTCGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTCGGTGATGTTATACCCCTTAACATTGGTGACCAGGTTCCTGCTGATGGAGTTTTGATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTCGAAAAAAATTCTAATGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAGTGGAACTATGCTGGTAACGGCTGTTGGCATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGATAATGGGGAGGAAACTCCTTTGCAGGTACGGTTAAATGGTCTTGCTACCTTGATTGGTATTGTTGGACTCTCTGTGGCTGTTGTTGTTCTGATGGTGCTACTGGCAAGATATTTCTCTGGGCATACTAGAAACCCAAATGGAAGTGTTCAATTTATAGCGGGCAAGACCAAAGTTGGTGATGCTATTGATGGAGTAATTAAGATATTCACTATCGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGACTGCCTTTAGCAGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATATGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGGATTGGTGGAAAGAAGATTGCTCCTCCTCATGATAAATCACAGTTCTATCCTTTGCTCTGCTCTTTGCTCATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTATATATCCCTGAGGGTGGTAATGATGTTGAGGTTTCTGGATCACCGACAGAAAAGGCAATTTTAGAGTGGGGAATTAAGCTTGGGATGAATTTTGACGCTGCAAGATCAGAATCATCAATTATTCATGTATTCCCATTCAATTCAGAAAAAAAGCGAGGAGGAGTTGCAACACGGAAGTCTGACTCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCTTGCTGTACACGGTATTTTGATGCTAATGATCAGTTGGTGGAGATGGATGAAGCAAAGATGTCAACTTTTAAAAAAGCTATTGAAGATATGGCTGCTGATAGTCTACGTTGTATTGCGATTTCATATAGATCATATGAAATGAAGAATGTTCCAACAAGCGAGGAAGAACTTGCCCACTGGTCATTACCAGAGGATGATCTTGTTTTATTGGCTATTATTGGCCTAAAGGATCCTTGTCGACCTGGTGTCGAAGATGCAGTGAAGCTTTGCCAAAGTGCCGGGGTTGAGGTAAAAATGGTCACTGGTGACAACGTTAAAACTGCAAGAGCAATTGCTGTGGAATGTGGAATACTTGGTTCAATTTCTGATGCTACAGAGCCAATAATCATTGAAGGAAAAAGATTTCGTGCCTTGACAGATAAAGAAAGAGAAGACATTGTTGAAAAGATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGAGATGGAACAAATGATGCTCCCGCACTACATGAGGCCGATATTGGTCTTTCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCTGCACTTGCTATAAATGTTGTTGCTGCATTTTCCACTGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTAGCCTTGGCAACTGAACCACCAACTGATTCACTGATGGATCAAAGTCCAATGGGTCGAAGAGAACCTCTTGTATCAAATATTATGTGGAGGAATCTGCTGATACAGGCAATTTATCAAGTGTCTGTCTTGCTTATACTTAATTTCCAAGGTGTGAACTTACTGGGTTTGAGGGATGAGCCCAATCGCCCTGCAATCAAAGTGAAGAACACTCTGATATTCAATGCATTTGTTCTTTGTCAAGTCTTCAATGAATTTAATGCCCGAAAGCCAGATAAATTCAACATATTCAAGGGAGTCACGAGAAACTACCTCTTTATGGGGATCGTGGGAATAACTGTTGTGCTTCAGATTGTGATCATTGAATATCTTGGAAAGTTCACTAAAACAGTCAAGCTTAATTGGAAGCAGTGGGTCATTTCTGTTATTATAGGATTTGTAAGCTGGCCTCTTGCTGTGGGTGGAAAACTGATACCAGTACCAAAGACTCAAGTCAGCAACTTTTTCCGAAACTGTCTTGCTTGTGGTCGTTGCAGAACTTAA 3288 0.4179 MSFSKGSPGSGSQTPHDIEAGSPDADFDDGDFSADPFDLTRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEEKKRVLRLVIVHTRAIQAAYRFKAAGQMNGTIKPPPSRSSTGEFSVGQEQLSSISRDRDTTALQENGGVVGLSHLLKTNLEKGIHGDDADLVKRRNVFGSNNYPRKSGRSFLMFMWDACKDLTLIILMVAAMASLALGIKSEGIKEGWYDGGSIAFAVILVILVTVFSFNGQNTLLCLSFSFLAISDYKQSLQFQDLNEHKRNIRLEVIRDGRRVEISIYDVVVGDVIPLNIGDQVPADGVLITGHSLAIDESSMTGESKIVEKNSNDPFLISGCKVADGSGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGLATLIGIVGLSVAVVVLMVLLARYFSGHTRNPNGSVQFIAGKTKVGDAIDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAWIGGKKIAPPHDKSQFYPLLCSLLIEGVAQNTNGSVYIPEGGNDVEVSGSPTEKAILEWGIKLGMNFDAARSESSIIHVFPFNSEKKRGGVATRKSDSEIHIHWKGAAEIVLACCTRYFDANDQLVEMDEAKMSTFKKAIEDMAADSLRCIAISYRSYEMKNVPTSEEELAHWSLPEDDLVLLAIIGLKDPCRPGVEDAVKLCQSAGVEVKMVTGDNVKTARAIAVECGILGSISDATEPIIIEGKRFRALTDKEREDIVEKILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMDQSPMGRREPLVSNIMWRNLLIQAIYQVSVLLILNFQGVNLLGLRDEPNRPAIKVKNTLIFNAFVLCQVFNEFNARKPDKFNIFKGVTRNYLFMGIVGITVVLQIVIIEYLGKFTKTVKLNWKQWVISVIIGFVSWPLAVGGKLIPVPKTQVSNFFRNCLACGRCRT 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2067 1095 SFLD Haloacid Dehalogenase 485 863 - -
Aed6g2067 1095 PRINTS P-type cation-transporting ATPase superfamily signature 811 830 - -
Aed6g2067 1095 PRINTS P-type cation-transporting ATPase superfamily signature 835 847 - -
Aed6g2067 1095 PRINTS P-type cation-transporting ATPase superfamily signature 704 715 - -
Aed6g2067 1095 PRINTS P-type cation-transporting ATPase superfamily signature 503 517 - -
Aed6g2067 1095 PRINTS P-type cation-transporting ATPase superfamily signature 327 341 - -
Aed6g2067 1095 PRINTS P-type cation-transporting ATPase superfamily signature 726 736 - -
Aed6g2067 1095 SMART Cation_ATPase_N_a_2 144 215 IPR004014 -
Aed6g2067 1095 Gene3D - 166 379 - -
Aed6g2067 1095 Pfam Cation transporting ATPase, C-terminus 896 1071 IPR006068 -
Aed6g2067 1095 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 510 708 IPR023299 GO:0000166
Aed6g2067 1095 SFLD p-type atpase 485 863 IPR044492 -
Aed6g2067 1095 SUPERFAMILY Calcium ATPase, transduction domain A 281 376 IPR008250 -
Aed6g2067 1095 SUPERFAMILY HAD-like 501 916 IPR036412 -
Aed6g2067 1095 Pfam haloacid dehalogenase-like hydrolase 500 825 - -
Aed6g2067 1095 PANTHER CATION TRANSPORTING ATPASE 31 1088 - -
Aed6g2067 1095 PANTHER CALCIUM-TRANSPORTING ATPASE 31 1088 - -
Aed6g2067 1095 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 443 528 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed6g2067 1095 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 779 891 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed6g2067 1095 ProSitePatterns E1-E2 ATPases phosphorylation site. 505 511 IPR018303 -
Aed6g2067 1095 MobiDBLite consensus disorder prediction 1 17 - -
Aed6g2067 1095 CDD P-type_ATPase_Ca_PMCA-like 169 944 - -
Aed6g2067 1095 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 121 1075 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Aed6g2067 1095 Pfam Cation transporter/ATPase, N-terminus 143 209 IPR004014 -
Aed6g2067 1095 MobiDBLite consensus disorder prediction 1 40 - -
Aed6g2067 1095 Pfam Ca2+-ATPase N terminal autoinhibitory domain 34 77 IPR024750 GO:0005516
Aed6g2067 1095 Gene3D - 46 100 - -
Aed6g2067 1095 Gene3D - 500 856 IPR023214 -
Aed6g2067 1095 Gene3D - 193 1062 - -
Aed6g2067 1095 Pfam E1-E2 ATPase 282 481 - -
Aed6g2067 1095 SUPERFAMILY Calcium ATPase, transmembrane domain M 144 1075 IPR023298 -
Aed6g2067 1095 Gene3D - 513 711 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2067 Aed-Chr6 23345745 23363350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2067 17 1085 Primary Pumps ATPases AT4G29900 69.841 0.0 1525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2067 K01537 - gmx:100790157 1886.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2067 6 23345745 23363350 Aed6g2067 6 23345745 23363350 ECH
Aed6g2067 6 23345745 23363350 Aed4g0876 4 7872155 7889450 PCT