Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2061 ATGGAGAATAATGGCTATGACTGGGACATCATGATTTTCCAAAACGAAGAGCTTCCAGTTGGCTGCAGCTGGGGAAATATGCAGGAAGAGGCAGCGTACTATGATTCAGGCTCCCCGGACGGTGGTGCTACTGCTACTTCATCATCGGTGGTAACTAATAATAATAATAAGAACAATATTGTCTTGGAGAGGAATAGAAGGAACAAGCTGAAGGATAGGCTTCATGCGCTTAGAGCAGCGGTCCCCAAAATCAGCAAGATGGATAGAGCTTCTATCATTAAGGATGCTATTGAGTACATCTACCAGTTGCAGGAGCAAGAGAAGATAATCCAGGCCGAGATTTTGGAACTTGAATCATCTTCTAATAAGCTCAAAAACCCAATAATATATGACCAGGAGGACCTCCCTATTCTGCTCAGGTCTAAGAAGAAGAGAACAACCACAGATCATCATCACGGCCTAATATTTGATAATCATTATTATTCTCCAATTCAAATAATTGAGCTGAGGGTTAAATACATGGGAGGGAAGATGTTTATGGTGAACTTGACATGTAGCAAAAGGACAGACACAATGGTAAAACTCTCTGAGGTCTTCGAATCTTTAAAGCTCAAGGTCATTACAGCCCATATCACTTCTTCTTCAGCCACACTTTTGAACACTGTCTTCATCCAGGCAGATGAAGAAGAGAAAGACTTTTTGGAAATAAAAATTCACACAGCGATTTCAGCTCTCAATGATCCTCAAAGCCCAATGAGTATCTGA 765 0.4118 MENNGYDWDIMIFQNEELPVGCSWGNMQEEAAYYDSGSPDGGATATSSSVVTNNNNKNNIVLERNRRNKLKDRLHALRAAVPKISKMDRASIIKDAIEYIYQLQEQEKIIQAEILELESSSNKLKNPIIYDQEDLPILLRSKKKRTTTDHHHGLIFDNHYYSPIQIIELRVKYMGGKMFMVNLTCSKRTDTMVKLSEVFESLKLKVITAHITSSSATLLNTVFIQADEEEKDFLEIKIHTAISALNDPQSPMSI 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2061 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 103 IPR011598 GO:0046983
Aed6g2061 254 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 248 - -
Aed6g2061 254 SMART finulus 60 109 IPR011598 GO:0046983
Aed6g2061 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 120 IPR036638 GO:0046983
Aed6g2061 254 Coils Coil 60 80 - -
Aed6g2061 254 PANTHER TRANSCRIPTION FACTOR BHLH35 3 248 - -
Aed6g2061 254 Gene3D - 49 120 IPR036638 GO:0046983
Aed6g2061 254 Pfam Helix-loop-helix DNA-binding domain 60 104 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2061 Aed-Chr6 23297781 23302354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2061 8 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 44.595 1.52e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed6g2061 HLH 5.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2061 - - gmx:100803916 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2061 6 23297781 23302354 Aed6g2061 6 23297781 23302354 ECH
Aed6g2061 6 23297781 23302354 Aed4g0866 4 7721557 7727761 PCT