Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2030 ATGGAGTGGGACAGTAATTCCGATCTGAGCGGGGACGATGAGGAGGAAGAGTTTCTTCTCAACGGCGACGGCGATGATGACGACGACGACGATGGCCCTCTCCCCTTCCCCTTTCCCGCCGTCGAAAACCTTCTCCAAACGACGCCGTGCGGCTTCGTCGTCACCGACGCGCTCGAGCCCGGCCACCCCGTCATTTACGTCAACACCGTCTTCGAGATCGTCACCGGCTACCGTGCCGAGGACATCCTCGGCCGGAATTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCGTTGGTGGACTCAACAGTAGTTTCAGAAATTAGAAGATGCCTTGATGAGGGGATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCTCTGATGAACAGATTGCGGTTGACACCTATATATGGAGATGATGAGACTATAACACATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGTTCCGGGTTTTACATTTAAGGAATCTGCTAAATCGTCTGATCGATTTCGTTCCGTGCTTTCCTCGTTGCAGACCCTTCCAGTGGGGGACAGGAATGTATCTCGTGGAGTTTGTGGGATTTTTCAATTGAGTGATGAGGTACTGTCTCTCAAGATACTTGCTCAACTAACTCCTAGAGATATTGCATCAGTTAGCTCTGTCTGTAGACGATTATATGAGCTGACAAAAAATGAAGACCTCTGGAGGATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTCGGATGGGGTCGGCTGGCAAGGGAATTGACCACACTTGAAGCAGCAGCATGGAGGAAGTTGACTGTTGGAGGTGGTGTTGAACCCTCCCGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTGCTTTTTGGTGGTGAAGGAGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCCGAGTGGCAACATGTCCATGTAAGCTCTCCTCCTCCTGGTCGTTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCGTTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCCAGATCATGGCACAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGGGGATGTGCAGACTCTGGAGTACTCTTGAGTGACACTTTCCTCCTTGATTTGTCAATGGAGAAGCCTGTCTGGAGAGAGATACCAGTGGCATGGACCCCACCATCTCGTCTGGGCCACACGCTGTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCAAAGAGTGGGCCCTTGCGATTTCGTTCCAGTGATGTATTCACAATGGATTTAAGTGAGGATGAACCTTGTTGGAGATGTGTAACAGGGAGTGGCATGCCTGGTGCTGGAAATCCTGGGGGTATAGCTCCTCCTCCTAGACTTGATCATGTTGCTGTTAGTCTTCCAGGTGGGAGAATTCTAATATTTGGTGGGTCTGTTGCTGGTCTTCACTCTGCCTCTCAGCTTTACATTCTTGATCCAACCGATGAGAAGCCTACGTGGAGAATCCTAAATGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACACAGTACATGTGTTGTTGGAGGGACAAGGGCTATCGTATTGGGTGGTCAAACCGGGGAGGAATGGATGCTAAGCGAGCTCCATGAACTTTCCCTGGCGAGTTCTGCCATTTAA 1869 0.4928 MEWDSNSDLSGDDEEEEFLLNGDGDDDDDDDGPLPFPFPAVENLLQTTPCGFVVTDALEPGHPVIYVNTVFEIVTGYRAEDILGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLDEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPVPGFTFKESAKSSDRFRSVLSSLQTLPVGDRNVSRGVCGIFQLSDEVLSLKILAQLTPRDIASVSSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGGVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEDEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSAI 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2030 622 Gene3D - 487 620 IPR015915 GO:0005515
Aed6g2030 622 CDD PAS 48 158 IPR000014 -
Aed6g2030 622 ProSiteProfiles F-box domain profile. 221 254 IPR001810 GO:0005515
Aed6g2030 622 MobiDBLite consensus disorder prediction 1 38 - -
Aed6g2030 622 SUPERFAMILY F-box domain 203 271 IPR036047 GO:0005515
Aed6g2030 622 MobiDBLite consensus disorder prediction 1 33 - -
Aed6g2030 622 SUPERFAMILY PYP-like sensor domain (PAS domain) 48 159 IPR035965 -
Aed6g2030 622 Pfam Galactose oxidase, central domain 368 417 - -
Aed6g2030 622 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 621 - -
Aed6g2030 622 TIGRFAM sensory_box: PAS domain S-box protein 46 158 IPR000014 -
Aed6g2030 622 PANTHER ADAGIO PROTEIN 1-LIKE 1 621 - -
Aed6g2030 622 Pfam PAS domain 49 159 IPR000014 -
Aed6g2030 622 Pfam F-box-like 218 256 IPR001810 GO:0005515
Aed6g2030 622 Gene3D - 285 486 IPR015915 GO:0005515
Aed6g2030 622 Gene3D PAS domain 34 170 - -
Aed6g2030 622 SUPERFAMILY Galactose oxidase, central domain 292 607 IPR011043 -
Aed6g2030 622 Pfam Kelch motif 530 577 IPR011498 GO:0005515
Aed6g2030 622 Pfam Kelch motif 463 514 IPR011498 GO:0005515
Aed6g2030 622 Pfam Galactose oxidase, central domain 306 356 - -
Aed6g2030 622 Gene3D - 207 254 - -
Aed6g2030 622 ProSiteProfiles PAS repeat profile. 41 119 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2030 Aed-Chr6 23079832 23083698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2030 45 160 AGC Kinase Gene Family AT5G58140 31.897 7.01e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2030 K12115 - gmx:100301887 1143.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2030 6 23079832 23083698 Aed6g2030 6 23079832 23083698 ECH