Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2027 ATGAAACAGAGTCCCCTGTTGGAAGATTTGTTTATTGCAATGAAGTATATTCGGAGAAACGGCTTCAAGAGGCTCTTCTCCTTGAGAAGGCGCAGTTCAAGGGAACAAATTCCGAGTCCAAGGAGTGAAGATAACTTTGAGATTCTTCCGCTTGAAGAAGAGCCTTCTAGAAGACCCTCTTGGAAGTGCTTCTCTTATGAAGAGTTGTTTGATGCCACTAATGGCTTCAGCTCAGAGAATCTGGTGGGAAAAGGAGGGTATGCAGAGGTTTACAAGGGAACAGTGAATGGTGGTGAGGAAATTGCTGTGAAGAGACTCACAAGAACTACGAGGGATGAGAGAAAGGAGAAAGAGTTTTTGACAGAGATTGGTACAATTGGTCATGTGAACCATTCCAACGTGTTGCCTCTTCTGGGCTGTTGTATTGACAATGGCCTTTACCTTATATCTGATTTTGGACTAGCAAAGTGGCTTCCATCTCAATGGACTCATCATTCAATTGCCCCAATAGAGGGGACATTTGGACATTTGGCCCCAGAGTACTACTTGCATGGAGTAGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCTTGTTAGAAGTAATCTCTGGAAGAAAACCAGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGCTAAACCAATATTGAGCAAGGGTGAGATAGAAGAGTTGGTGGATCCAAGGCTTGAAGGGGCTTATGATGTGACAGAGTTAAAAAGATTTGCCTTCGCAGCCTCTCTTTGCATTAGGGCATCTTCTACTTGGCGACCTACCATGAGTGAGATATTAGAGATAATGGAGGAAGGAGAAACGGATATAGAGAAGTGGAAAATGCCAGAGGAAGAAGAAGAGGAAGAGGAGGAGTTCTGGGGTTTTGAGGATTTGGAATATGAATATGACAGCTCTTTTTCAATGTCTTTGCTTGACGACTCCATTGGAAGTACTTAA 975 0.4349 MKQSPLLEDLFIAMKYIRRNGFKRLFSLRRRSSREQIPSPRSEDNFEILPLEEEPSRRPSWKCFSYEELFDATNGFSSENLVGKGGYAEVYKGTVNGGEEIAVKRLTRTTRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILSKGEIEELVDPRLEGAYDVTELKRFAFAASLCIRASSTWRPTMSEILEIMEEGETDIEKWKMPEEEEEEEEEFWGFEDLEYEYDSSFSMSLLDDSIGST 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2027 324 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Aed6g2027 324 ProSiteProfiles Protein kinase domain profile. 1 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed6g2027 324 Gene3D Phosphorylase Kinase; domain 1 49 146 - -
Aed6g2027 324 SUPERFAMILY Protein kinase-like (PK-like) 60 277 IPR011009 -
Aed6g2027 324 PANTHER OS08G0249100 PROTEIN 29 149 - -
Aed6g2027 324 PANTHER OS08G0249100 PROTEIN 149 305 - -
Aed6g2027 324 Gene3D Transferase(Phosphotransferase) domain 1 147 299 - -
Aed6g2027 324 Pfam Protein tyrosine and serine/threonine kinase 79 146 IPR001245 GO:0004672|GO:0006468
Aed6g2027 324 Pfam Protein tyrosine and serine/threonine kinase 147 216 IPR001245 GO:0004672|GO:0006468
Aed6g2027 324 PANTHER OS04G0654600 PROTEIN 29 149 - -
Aed6g2027 324 PANTHER OS04G0654600 PROTEIN 149 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2027 Aed-Chr6 23060793 23065584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2027 10 275 Receptor kinase-like Gene Family AT4G23280 29.153 5.50e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Aed6g2027 PK_Tyr_Ser-Thr 1.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2027 - - nta:107808610 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2027 6 23060793 23065584 Aed6g2027 6 23060793 23065584 ECH
Aed6g2027 6 23060793 23065584 Aed4g0806 4 6959776 6964018 PCT